Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1507 ATGGGTCATCCGATGCCGGCAGTGAGCGCGAAGAGCACTCCAACATTTCCGCCTGATGTTCTGAAGTGTAGTTCTCAAAGGGAGCAAAAGAAGTCGTTTAAAGAAGACAAGCCATTCAGTTTTTTACATGTTTTCTGGGAGGGTCTTGTAGCTGGAGGTATTGCTGGTGTTGTTGTTGAAGCAGCTTTATATCCAATTGATACAATAAAAACTAGACTTCAGGCTGCTCATGGTGGAGGAAAAATTGTATTGAAGGGTCTCTATTCTGGATTGGCAGGAAATCTTGCTGGTGTCTTACCGGCCTCTGCGATATTTGTTGGTGTATATGAACCTACAAAGCAGAAACTGCTGAAGACCATCCCTGAAAACCTTAGTGCTTTTGCTCATTTGACTGCAGGTGCTGTTGGCGGGGCTGCATCTTCTCTTGTTCGTGTGCCAACAGAGGTTGTTAAGCAAAGAATGCAGACTGGGCAATTTGCTTCTGCAACTGATGCTGTTCAACTTATTGTTGCCAAGGAGGGGTTTAAAGGTCTCTATGCGGGATATGGATCCTTTTTATTGCGAGATTTACCTTTTGATGCTCTCCAGTTTTGCATCTATGAGCAGCTACGGATAGGGTATAAGCTAGCGGCACAGAGGGACTTGAATGATCCTGAGAATGCTATGATTGGTGCTTTTTCTGGTGCAATAACAGGAGCTATAACTACTCCTCTTGATGTGATAAAGACTAGATTAATGGTTCAGGGATCTGCAAACCAGTACAAAGGGATTTTTGACTGTGTTAGGACTGTCATAAGAGAAGAAGGAACTCCTGCTCTTTTCAAGGGTATCGGGCCAAGAGTACTCTGGATAGGTATTGGAGGTTCAATTTTCTTTGTCATTCTTGAAAGGACAAAGCAGGTGGTTGCCCAAACGCACACTAGGACTGAGAAGTAG 936 0.4402 MGHPMPAVSAKSTPTFPPDVLKCSSQREQKKSFKEDKPFSFLHVFWEGLVAGGIAGVVVEAALYPIDTIKTRLQAAHGGGKIVLKGLYSGLAGNLAGVLPASAIFVGVYEPTKQKLLKTIPENLSAFAHLTAGAVGGAASSLVRVPTEVVKQRMQTGQFASATDAVQLIVAKEGFKGLYAGYGSFLLRDLPFDALQFCIYEQLRIGYKLAAQRDLNDPENAMIGAFSGAITGAITTPLDVIKTRLMVQGSANQYKGIFDCVRTVIREEGTPALFKGIGPRVLWIGIGGSIFFVILERTKQVVAQTHTRTEK* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1507 311 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g1507 311 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 47 311 - -
Vvi18g1507 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 206 IPR018108 -
Vvi18g1507 311 Gene3D Mitochondrial carrier domain 45 311 IPR023395 -
Vvi18g1507 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 301 IPR018108 -
Vvi18g1507 311 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 28 307 - -
Vvi18g1507 311 Pfam Mitochondrial carrier protein 124 204 IPR018108 -
Vvi18g1507 311 Pfam Mitochondrial carrier protein 219 303 IPR018108 -
Vvi18g1507 311 Pfam Mitochondrial carrier protein 45 118 IPR018108 -
Vvi18g1507 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 43 115 IPR018108 -
Vvi18g1507 311 SUPERFAMILY Mitochondrial carrier 45 296 IPR023395 -
Vvi18g1507 311 PRINTS Mitochondrial carrier protein signature 274 292 IPR002067 GO:0055085
Vvi18g1507 311 PRINTS Mitochondrial carrier protein signature 142 156 IPR002067 GO:0055085
Vvi18g1507 311 PRINTS Mitochondrial carrier protein signature 129 142 IPR002067 GO:0055085
Vvi18g1507 311 PRINTS Mitochondrial carrier protein signature 230 248 IPR002067 GO:0055085
Vvi18g1507 311 PRINTS Mitochondrial carrier protein signature 181 201 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1507 Vvi-Chr18 18987760 19001645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1507 122 300 Chloroplast and Mitochondria Gene Families AT1G07030 29.348 2.61e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1507 K15111 - vvi:100261204 597.816