Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1493 ATGGGATGGGTGGCAGGAAGCAAGGGGTGGCTTGCTGAGGAAGACTCAAAAAGGAAAACAGAAGAAAGAAGAAAGGAGGGAAGGAGATATCTGGGGGAAAGGGAGATAGCTGTAAGGGGTACGAGAGATTACGGGAGAAGAAAAAAGCAGAGGAGCTTTGAAAATCTGGCTGGTAGAGGAGGCAGGAGGGCGGCTGTTGCGACCATCCCCAAGCAAGGATCCTCATATACGAACGTTGCCCAAGGAAGCTTCCGTGATCGTTTTTATAAAACAAATAAGGTTCTATTGACATGGAAGCAATGGCTTGAGATCGGTATCGGTGCTGCTCGGGGACTAAAGCATCTACATCAAGGCTCGAAATGCGAAATCATTCACCAGGACATCAAGACCACAGATATTTCGTTAGATGAGAAACGGGTGGCCAAATTTGCTGATTTCGGAGTGGTGTTGTTTGAAGTACTGTGCGCGGGACTGGCTGTGGAAGGGAGCTTGATGAAGGAGCGTTCTTTGAGGGGCACGGAGACGAAGGTGATGCAATGTTATGCAGAAGGTAGATGGAAAGGGTTTCGAGATTAG 576 0.4844 MGWVAGSKGWLAEEDSKRKTEERRKEGRRYLGEREIAVRGTRDYGRRKKQRSFENLAGRGGRRAAVATIPKQGSSYTNVAQGSFRDRFYKTNKVLLTWKQWLEIGIGAARGLKHLHQGSKCEIIHQDIKTTDISLDEKRVAKFADFGVVLFEVLCAGLAVEGSLMKERSLRGTETKVMQCYAEGRWKGFRD* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1493 191 MobiDBLite consensus disorder prediction 1 27 - -
Vvi18g1493 191 Gene3D Transferase(Phosphotransferase) domain 1 79 178 - -
Vvi18g1493 191 MobiDBLite consensus disorder prediction 11 27 - -
Vvi18g1493 191 PANTHER OS07G0166700 PROTEIN 76 148 IPR045272 GO:0004714|GO:0006468
Vvi18g1493 191 Pfam Protein tyrosine and serine/threonine kinase 79 148 IPR001245 GO:0004672|GO:0006468
Vvi18g1493 191 SUPERFAMILY Protein kinase-like (PK-like) 79 151 IPR011009 -
Vvi18g1493 191 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1493 Vvi-Chr18 18746412 18747996 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1493 76 148 Receptor kinase-like Gene Family AT3G51550 58.904 1.07e-21 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi18g1493 PK_Tyr_Ser-Thr 1.5e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1493 - - vvi:104881160 251.136