Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1477 ATGTCATTGACTAATATCACGGCTCTGCAAGTATTGGATCTATCAAACAACCGCCTCTCAGGAGTGGTTCCAGACAATGGCTCTTTTTCATTATTTACCCCCATCAGTTTTGCTAATAACCTGGATTTATGTGGCCCGGTTACTGGGCACCCATGCCCTGGATCTCCCCCATTTTCTCCACCTCCCCCATTTGTCCCACCACCACCAATTTCTTCACAAGGAGGGAACAGTGCCACAGGAGCAATTGCTGGGGGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGCTGAAGAGGACCCAGAGGTTCATCTGGGGCAGCTTAAAAGGTTTTCACTGCGAGAATTACAAGTTGCAACAGATAGTTTTAGCAACAAGAACATTCTGGGTAGAGGTGGATTTGGTAAGGTGTACAAAGGACGCTTAGCGGATGGTTCTCTTGTGGCTGTGAAAAGATTGAAAGAAGAGCGTACACCAGGTGGTGAGCTGCAGTTTCAAACAGAGGTAGAGATGATAAGCATGGCTGTGCATCGGAATCTCCTCCGTCTTCGTGGTTTTTGCATGACACCTACTGAACGGCTGCTTGTTTATCCGTATATGGCTAATGGAAGCGTTGCATCATGTTTAAGAGAACGCCCGGCATCTGAACCACCACTTGATTGGCCAACAAGGAAGCGAATTGCGTTGGGATCTGCAAGAGGGCTTTCTTATTTGCATGATCATTGTGACCCAAAGATTATTCACCGTGATGTGAAAGCTGCAAATATTTTGTTGGATGAGGAATTTGAGGCTGTTGTTGGAGACTTTGGGTTAGCTAAGCTTATGGATTACAAGGATACCCATGTTACCACTGCTGTCCGTGGCACAATAGGACATATAGCTCCAGAGTACCTCTCTACTGGAAAGTCTTCAGAAAAAACTGATGTTTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTAAAAGGACTTCTGAAAGAGAAGAAGTTAGAAATGCTGGTTGATCCTGATCTTAAGAACAATTATGTAGAAGCAGAAGTAGAGCAGCTAATCCAGGTTGCCCTGCTGTGCACGCAAGGCTCTCCAATGGACCGGCCCAAGATGTCAGAAGTGGTGAGAATGCTGGAAGGTGATGGATTGGCAGAGAGGTGGGACGAGTGGCAGAAAGTGGAAGTTCTCCGCCAGGAGGTGGAACTCGCTCCTCACTCCAACTCTGATTGGATTGTGGACTCAACAGACAATCTACATGCGGTTGAATTATCGGGTCCAAGGTGA 1404 0.4672 MSLTNITALQVLDLSNNRLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISSQGGNSATGAIAGGVAAGAALLFAAPAIGFAWWRRRKPQEYFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPASEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHSNSDWIVDSTDNLHAVELSGPR* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1477 467 FunFam Somatic embryogenesis receptor-like kinase 1 221 438 - -
Vvi18g1477 467 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Vvi18g1477 467 ProSiteProfiles Protein kinase domain profile. 144 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1477 467 FunFam Somatic embryogenesis receptor kinase 1 113 220 - -
Vvi18g1477 467 Pfam Protein kinase domain 145 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1477 467 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 429 - -
Vvi18g1477 467 Gene3D Ribonuclease Inhibitor 1 56 IPR032675 -
Vvi18g1477 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Vvi18g1477 467 Gene3D Phosphorylase Kinase; domain 1 113 220 - -
Vvi18g1477 467 SMART serkin_6 144 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1477 467 Gene3D Transferase(Phosphotransferase) domain 1 221 438 - -
Vvi18g1477 467 SUPERFAMILY Protein kinase-like (PK-like) 123 419 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1477 Vvi-Chr18 18295890 18300713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1477 1 467 Receptor kinase-like Gene Family AT1G71830 91.863 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vvi18g1477 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1477 K13418 - vvi:100247683 863.988