Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1470 ATGGACGTGTGGCGGACGTTAGTAGCTCGCCCATGGTGGTGGGTGAAGATGACACACTTGCTAAGTGATGTACAGTGGGAGTGGGTAATGGCTTGTGGGAGAAGACATAAATGGGGGGGAAGGAGGCTGGGAGATATATACTTCTTGACGGTTTTCAAAAGAGGAGGAAGGAAGCATGAAAAGAAAAGGAAGAGATCTGAGACCACACGCGAGTGGGGATTTTCCTACTGGAAGAAGGGCTTTACTAGCACTTTTCATGTTGGCTATCCCTTCATTTTCATTGCTTTTCCTCTCGTTGGGGTCTCAGCATCTCTTGATGCTCTTATTGATATTACTGGTGGAAAGGTAAACATTCATGTACTAATGGCTCTTGCGACCTCCACATCAGTATTTATGGGAAACCCATTGGAAGGTGGTTTACTTCTTGTGACGTTTAACCCGACTCATATTGCTGAAAAGTATTTCACCAGTCGCTCAATGGTGGATGTTGAGGAGTTGAAAGAAAATTATCCAGATTTCGCTCTTGTTTTGGAAGTGAATAATAATAAACCGCCTAACTTCTCTCATTTGGCCTACAAAAAGGTCCCTTTAGTAGCTGCTTCTCAGTTGAAGAGATTCCAGACAAATGGCACTTATGTGGAAAAGATTGATAACCACGTGGAGTCCCTTTAG 672 0.4375 MDVWRTLVARPWWWVKMTHLLSDVQWEWVMACGRRHKWGGRRLGDIYFLTVFKRGGRKHEKKRKRSETTREWGFSYWKKGFTSTFHVGYPFIFIAFPLVGVSASLDALIDITGGKVNIHVLMALATSTSVFMGNPLEGGLLLVTFNPTHIAEKYFTSRSMVDVEELKENYPDFALVLEVNNNKPPNFSHLAYKKVPLVAASQLKRFQTNGTYVEKIDNHVESL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1470 223 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 90 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1470 Vvi-Chr18 18076976 18078402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1470 91 197 Primary Pumps ATPases AT4G37270 71.028 9.71e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1470 K01534 - vvi:100255947 192.2