Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1464 ATGCCGGTATGTGGCTTAGTAGTGCAGAGGCATTGGGCACTGATGCAGCTCCTGAGTTTTCTTTGCCCACTAAGACAATTGTGGAAAAGAACGGATGATGAAGAACTGGTTGTTCCTGCCGATGAGGATCAGAATGTTTGTGCATTGAGTAAGGAGCCTTTTGATGATTTTTATAGTGATGAGACTGAGGAATGGATGTACAAAGGCGCTGTTTACTTGAATGCACCAGAGGAATCAGCAACGGGCATGGAATGGTCTCAGTTAGGTCCCATAGCATATGCCAAATCCAGATCTGAGTCTAATACGGTTTCCCTTGAAGATTTTGGACAAGATAAAAGGGGAAATATGGAAGAGGGTAGTAAGAGAAAAAGGATGCTCAACAAGAAGCTGCTGAGAATGCTCTTCACAACTTAG 414 0.4372 MPVCGLVVQRHWALMQLLSFLCPLRQLWKRTDDEELVVPADEDQNVCALSKEPFDDFYSDETEEWMYKGAVYLNAPEESATGMEWSQLGPIAYAKSRSESNTVSLEDFGQDKRGNMEEGSKRKRMLNKKLLRMLFTT* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1464 137 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 30 110 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vvi18g1464 137 MobiDBLite consensus disorder prediction 97 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1464 Vvi-Chr18 17966984 17967397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1464 21 125 C2H2 Transcription Factor Family AT4G04885 60.000 4.85e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1464 K14400 - vvi:100255600 157.532