Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1450 ATGGTATGCACCCTCTTAGAAGGTATAAGGTCTCTGAAAGGAAGAAATAGAGTAATGAATAATATGCATAAAGCTTCTGGTCATAGCATTCTTAGTGTCATATTCTGTGAGGTTGTTGCTATATATGGAGTTATTGTGGCAATCATTCTTCAAACAAAGCTAGAGAGTGTGCCTGCATCCAATATTTATGCACCAGAGTCCCTTAGAGTCGGATATGCAATCTTTGCCTCTGGAATTATTATGGGTTTTGCCAACCTTGTCTGTGGGTCGTTGGTTCAAATGATCTTTCTATATGTCGGTTCATGCAGAAGGAGATGGACCACAACAATCAATGAGCAACTGGAAGGGAGTTTTTAG 357 0.3978 MVCTLLEGIRSLKGRNRVMNNMHKASGHSILSVIFCEVVAIYGVIVAIILQTKLESVPASNIYAPESLRVGYAIFASGIIMGFANLVCGSLVQMIFLYVGSCRRRWTTTINEQLEGSF* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1450 118 Pfam ATP synthase subunit C 17 50 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vvi18g1450 118 SUPERFAMILY F1F0 ATP synthase subunit C 25 53 IPR035921 -
Vvi18g1450 118 FunFam Uncharacterized protein 11 104 - -
Vvi18g1450 118 Gene3D - 11 104 IPR035921 -
Vvi18g1450 118 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 26 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1450 Vvi-Chr18 17738305 17740132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1450 24 91 Primary Pumps ATPases(2) AT4G32530 75.000 5.36e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1450 K03661 - vvi:100253217 111.694