LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1448	ATGGTGGGTGCATCGAGCTCATGGTCTCGCGCATTGGTTCAGATCTCACCCTCCACTTTCTCCGTCATCGGTATCGCCATCGGCATCGGCGTTTCCGTCTTGGGTGCCGCTTGGGGAATTTATATAACTGGAAGTATTTTAATTGGTGCCATCAAAGCTCCTCGGATTACTTCAAAAAATCTGATTAGATGA	192	0.4792	MVGASSSWSRALVQISPSTFSVIGIAIGIGVSVLGAAWGIYITGSILIGAIKAPRITSKNLIR*	64

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1448	63	SUPERFAMILY	F1F0 ATP synthase subunit C	17	61	IPR035921	-
	Vvi18g1448	63	Gene3D	-	18	63	IPR035921	-
	Vvi18g1448	63	FunFam	V-type proton ATPase subunit c''1	18	63	-	-
	Vvi18g1448	63	PANTHER	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	5	62	-	-

Showing 1 to 4 of 4 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1448	Vvi-Chr18	17732154	17732517	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g1448	2	62	Primary Pumps ATPases(2)	AT4G32530	80.645	9.93e-25	89.4

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1448	K03661		-	vvi:100253217	100.523

Showing 1 to 1 of 1 entries