Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1430 ATGGATCTTCCATGTCTAGTTCTACCCCTCTCCATCCTCCTCCTCTTCTCCTCCGCGGTCTCTTCCGCGGATATCCCCCTCGGTGCCAGCATCACCGCCTCCGACCTCAACCAAACCTGGAACTCCCCCAACTCCACCTTCTCTCTTGGCTTCATCGCCGCCACACCCACCTCCTTCTATGCCGCCATCACCTACGGCGGCGTCCCCATCTGGAGGGCCGGTGGTGCCTACCCTGTCGCCGTTGACTTCGGCGGATCCTTCCGGTTCCTCACTTCCGGTAACCTCCACCTAGTAAGCAGCAACGGCACCGTCCTCTGGGAATCCGGCACCGCTGGCCGCGGCGTCTCCTCCGCCACCCTCTCTGACTCAGGTAACCTTGTTCTTACAAACGGCACCGTTTCTGTCTGGTCCACTTTCGAAAACCCAACAGATACGATTGTTCCCACGCAAAATTTCACGACTTCCAACTCTTTGCGATCTGGGTTATACTCATTTAGTTTAACTAAGTCTGGAAATCTCACTCTTACCTGGAATAGCAGCATATTGTATTGGAGTAAGGGCTTGAACTCTACAGTTGATAAAAACTTGACTTCACCCAGTTTAGGCCTTCAATCAATTGGGATTTTATCACTTTCTGATCTCACATTATCCACTTCTGTAGTTTTGGCTTACAGCAGTGATTATGCTGAAGGCAGTGATCTACTCAGGTTTGTGAGGTTAGATAGTGATGGGAATTTGAGAATTTATAGCTCCGATAGTGGTAGTGGAATCTCGAATGTGAGATGGGCTGCTGTTGAGGACCAATGTGAGGTTTTCGGATATTGCGGAAACCTAGGTATTTGTAGTTATAATGATTCCACTCCGGTTTGCGGGTGCCCATCTGAGAATTTTGAGCTTGTTGATCCCAAGGATAGTACTAAGGGGTGTAAGAGGAAGGAGGAGATTGAGAATTGTCCTGGGGATTTGACCATGTTGGAGTTGCAGCATGCCAAGTTCTTGACCTACTCTTCTGAGCTCTCCTCACAGGTTTTCTTCGTTGGGATATCGGCCTGTAGGTTGAATTGTCTTGTGGGTGGGTCTTGTATTGCTTCAACTTCACTGTCAGATGGCACAGGGTTGTGTTACTTGAAAGTGCCTGGTTTTGTTAGCGGGTACCAGTCGCCTGCACTGCCTAGTACTTCTTATGTTAAGGTTTGTGGGCCTGTGGTGCCGAACCCCTCTGCTTTTTCCCATGGAGATGATGGGGCGTGGAAGTTGCATGCGTGGATAGTTGCTGTTGTGGTTTTGGGTACTCTTGCTGCTTTGGTTTTGTTGGAGGGTGGTTTGTGGTGGTGGTGCTGTAAAAACAGCCCCAAATTTGGGGGATTATCAGCTCAATATGCACTTCTTGAGTATGCATCTGGTGCCCCTGTGCAGTTCTCATACAAGGAACTCCAGCGCTCAACAAAGGGGTTCAAGGAGAAGCTTGGAGCAGGAGGATTTGGGGCTGTCTACAGAGGGATTCTTGCTAACAGAACCATTGTTGCAGTGAAACAACTTGAGGGCATTGAACAGGGGGAGAAACAGTTCAGGATGGAGGTTGCAACCATAAGTAGCACCCACCATTTGAATTTGGTGAGGTTGATTGGTTTCTGCTCTGAGGGACGTCACAGGCTTCTGGTGTACGAGTTCATGAAAAATGGGTCTCTCGATACCTGCCTCTTTCCCACAGAAGGACATTCAGGGAGATTGTTAAACTGGGAAAACCGATTTAGCATAGCCCTAGGAACTGCAAGGGGTATCACATACCTTCATGAGGAGTGTCGAGACTGTATTGTCCACTGTGATATAAAGCCTGAAAACATTCTGTTGGATGAGAATTATAATGCCAAAGTGTCAGATTTTGGCCTTGCAAAGCTCATAAATCCTAAGGACCATAGGTACCGAACCTTGACAAGTGTTAGAGGAACTAGAGGATATTTGGCACCAGAATGGCTTGCAAATCTTCCAATCACTTCAAAATCTGATGTTTACAGCTATGGTATGGTTCTATTGGAGATAGTGAGCGGGAAAAGGAATTTTGAAGTCTCAGCGGAAACTAACAGGAAAAAGTTTTCATTGTGGGCTTATGAAGAGTTTGAGAAGGGAAACATGGAGGGAATAGTGGACAAGAGGCTCGGTGACCAGGGGGTGGACATGGAGCAAGCGAAGAGAGCAATCCAGGTGAGCTTTTGGTGCATCCAGGAGCAGCCATCTCAGAGGCCAATGATGGGGAAAGTAGTCCAAATGCTGGAAGGAGTCACAGAGATTGAGAGGCCACCAGCCCCAAAGGCTGCTATGGAAGTATCTGCTGGTGGGACTAGCATAAACGTGAGCAGTAATGTAAGCGCACTATCCACCTTTGCAGCTTCAGCCCCAGCTCCCTCATCATCATCATCAATGCAAAACGCAGGATTTTCATCAATTGTTTTAGGGAGGAATGTGGAGAAATCATCCTCATCTGTTACAGGGAGGAACGTGGAGAGAGCCTCTTCATCCCTCTTACACTCAGAGGTTGCTCCAGGCTTGTAA 2550 0.4827 MDLPCLVLPLSILLLFSSAVSSADIPLGASITASDLNQTWNSPNSTFSLGFIAATPTSFYAAITYGGVPIWRAGGAYPVAVDFGGSFRFLTSGNLHLVSSNGTVLWESGTAGRGVSSATLSDSGNLVLTNGTVSVWSTFENPTDTIVPTQNFTTSNSLRSGLYSFSLTKSGNLTLTWNSSILYWSKGLNSTVDKNLTSPSLGLQSIGILSLSDLTLSTSVVLAYSSDYAEGSDLLRFVRLDSDGNLRIYSSDSGSGISNVRWAAVEDQCEVFGYCGNLGICSYNDSTPVCGCPSENFELVDPKDSTKGCKRKEEIENCPGDLTMLELQHAKFLTYSSELSSQVFFVGISACRLNCLVGGSCIASTSLSDGTGLCYLKVPGFVSGYQSPALPSTSYVKVCGPVVPNPSAFSHGDDGAWKLHAWIVAVVVLGTLAALVLLEGGLWWWCCKNSPKFGGLSAQYALLEYASGAPVQFSYKELQRSTKGFKEKLGAGGFGAVYRGILANRTIVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDTCLFPTEGHSGRLLNWENRFSIALGTARGITYLHEECRDCIVHCDIKPENILLDENYNAKVSDFGLAKLINPKDHRYRTLTSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEIVSGKRNFEVSAETNRKKFSLWAYEEFEKGNMEGIVDKRLGDQGVDMEQAKRAIQVSFWCIQEQPSQRPMMGKVVQMLEGVTEIERPPAPKAAMEVSAGGTSINVSSNVSALSTFAASAPAPSSSSSMQNAGFSSIVLGRNVEKSSSSVTGRNVERASSSLLHSEVAPGL* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1430 849 Pfam D-mannose binding lectin 70 156 IPR001480 -
Vvi18g1430 849 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 188 IPR036426 -
Vvi18g1430 849 SUPERFAMILY Protein kinase-like (PK-like) 466 758 IPR011009 -
Vvi18g1430 849 Gene3D - 140 264 IPR036426 -
Vvi18g1430 849 Pfam Protein kinase domain 486 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1430 849 CDD STKc_IRAK 489 759 - -
Vvi18g1430 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Vvi18g1430 849 FunFam S-receptor-like serine/threonine-protein kinase 457 557 - -
Vvi18g1430 849 Gene3D Phosphorylase Kinase; domain 1 457 557 - -
Vvi18g1430 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 142 264 - -
Vvi18g1430 849 Gene3D Transferase(Phosphotransferase) domain 1 558 772 - -
Vvi18g1430 849 MobiDBLite consensus disorder prediction 821 839 - -
Vvi18g1430 849 MobiDBLite consensus disorder prediction 821 849 - -
Vvi18g1430 849 PANTHER OS07G0415500 PROTEIN 9 769 - -
Vvi18g1430 849 PIRSF SRK 1 816 IPR024171 GO:0004674
Vvi18g1430 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 141 - -
Vvi18g1430 849 ProSiteProfiles Bulb-type lectin domain profile. 16 141 IPR001480 -
Vvi18g1430 849 Gene3D - 24 139 IPR036426 -
Vvi18g1430 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 558 767 - -
Vvi18g1430 849 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524
Vvi18g1430 849 SMART blect_4 33 142 IPR001480 -
Vvi18g1430 849 SMART serkin_6 483 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1430 849 ProSiteProfiles Protein kinase domain profile. 483 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1430 849 ProSiteProfiles Bulb-type lectin domain profile. 143 261 IPR001480 -
Vvi18g1430 849 Pfam S-locus glycoprotein domain 219 293 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1430 Vvi-Chr18 17425052 17427601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1430 456 767 Receptor kinase-like Gene Family AT5G20050 44.615 1.22e-81 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi18g1430 Pkinase 1.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1430 - - vvi:100252926 1610.12