Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1429 ATGGCTTACAGTAGTGATTATGCTGAAGGCAGTGATATGCTCAGATTTGTGAGGTTAGATAGTGATGGAAACTTAAGAATTTATAGCTTCGATAGGGGTAGTAGAATATCTACTGTGAGGTGGGCTGCTGTTAAGGATCAGTGTGAGGTTTTCGGATATTGCGGAGATCTGGGGATTTGTAGTTATCATGATTCCAGTCCGGTTTGCAGTTGCCCCTCTGAGAATTTTGAGCTTGTTGATCCCAAGGATAGTACTAAGGGGTGCAAGAGGAAGGAAGAGATTGAGAATTGTGCTGGGGTTGTCACCATGTTGGAGTTGCAGCATGCCAAGTTCTTGACCTACCCTCCAGAGTCCCCCTCACAAGTTTTCTTTGTTGGCATATTGGCTTGTAGGTTGAATTGTCTTATGGGAGGGGCTTGTGTTGCTTCAACTTCACTGTCAGATGGCACGGGCTCGTGTTATATGAAAGTTCCCGGTTTTGTAAGTGGGTATCAATCACCTACATTGCCTAGTACTTCATATATTAAGGTTTGTGGACCTGTGTCTCCAAACCCATCTGCATCTTTGAATGGTGGAGACGACACTTCTTGCAAATTGCATATGTGGATAGTCGCTGCTGTGGTTGTGGGTACCCTTTTGGGTTTGGTTTTACTGCAGGTGGGTTTGTGGTGGTGGTGCTGCTGTAGAAACAGCCCCAAGTTTTGGGGATCATCAGTTCCACATGCCCTTCTCGAGTATGCATCTGGTGCTCCTGTGCGGTTCTCATACAAGGACCTCCGCTATTCGACTAAGGGATTCAAGGAGAAGCTTGGAGCAGGAGGATTTGGGGCTGTTTACAGAGGGGTTCTTGCTAACAGAACCATTGTTGCAGTGAAACAACTTGAGGGCATTGAACAGGGGGAGAAACAGTTCAGGATGGAGGTTGCAACCATAAGTAGTACCCACCATTTGAATTTGGTGAGGCTGATCGGTTTCTGCTCTGAGGGACGTCACAGGCTTCTGGTGTACGAGTTCATGAAAAATGGATCCCTCGATATCTTCCTCTTTCCAACAGGAGGGCATTCAGGGAGATTGTTAAATTGGGAAAGCCGATTTAGTATAGCCCTCGGCACTGCGAGGGGAATCACATACCTTCATGAGGAGTGTCGAGACTGCATTGTCCATTGTGATATAAAGCCTGAAAACATTCTCTTGGATGAGAATTACAGTGCCAAAGTGTCAGATTTTGGCCTTGCAAAGCTCATAAACCTCAAGGACCATAGGTACCGAACCTTGACGAGTGTGAGAGGAACTAGAGGATATTTGGCGCCAGAATGGCTTGCAAATCTTCCAATAACTTCAAAATCTGATGTCTACGGCTATGGTATGGTGCTGTTGGAGATGGTGAGTGGGAGAAGGAATTTTGAAGTATCAGCAGAAAGTAATGGGAAAAAGTTTTCAGTGTGGGCATATGAAGAGTTTGAGAAGGGAAACATGGAGGGGATAGTGGACAAGAGGCTTGTTGACAGGGAGGTGAACATGGAGCAAGCCAAGAGGGCAGTTGAGGTGAGCTTTTGGTGCATCCAGGAGCAACCCTCTCAGAGGCCAACGATGGGGAAAGTAGTCCAAATGCTGGAAGGAATTATAGAGATTGAGAAGCCACCAGCCCCAAAGGCCGGTACTGAAGAGTGTACTGGAGAAAGTAGTCGAAATGTGAGTAGTAAGGTAGTGGCTGTCCCTCCCTCCTCATCTTCATTGCTGGAAAAAACAGGATGTTCATCATTTGTTTCAGGGAGGACTGTGGAGAAATCATCTCTTTCAGCAAGGAATGTGGAGATAGCCTCTGCATGCCTTTTGCAGTCAGAGGAGTCAGAAACTTAG 1860 0.464 MAYSSDYAEGSDMLRFVRLDSDGNLRIYSFDRGSRISTVRWAAVKDQCEVFGYCGDLGICSYHDSSPVCSCPSENFELVDPKDSTKGCKRKEEIENCAGVVTMLELQHAKFLTYPPESPSQVFFVGILACRLNCLMGGACVASTSLSDGTGSCYMKVPGFVSGYQSPTLPSTSYIKVCGPVSPNPSASLNGGDDTSCKLHMWIVAAVVVGTLLGLVLLQVGLWWWCCCRNSPKFWGSSVPHALLEYASGAPVRFSYKDLRYSTKGFKEKLGAGGFGAVYRGVLANRTIVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDIFLFPTGGHSGRLLNWESRFSIALGTARGITYLHEECRDCIVHCDIKPENILLDENYSAKVSDFGLAKLINLKDHRYRTLTSVRGTRGYLAPEWLANLPITSKSDVYGYGMVLLEMVSGRRNFEVSAESNGKKFSVWAYEEFEKGNMEGIVDKRLVDREVNMEQAKRAVEVSFWCIQEQPSQRPTMGKVVQMLEGIIEIEKPPAPKAGTEECTGESSRNVSSKVVAVPPSSSSLLEKTGCSSFVSGRTVEKSSLSARNVEIASACLLQSEESET* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1429 619 SUPERFAMILY Protein kinase-like (PK-like) 245 539 IPR011009 -
Vvi18g1429 619 Gene3D Phosphorylase Kinase; domain 1 238 338 - -
Vvi18g1429 619 CDD STKc_IRAK 270 541 - -
Vvi18g1429 619 PANTHER OS07G0415500 PROTEIN 1 550 - -
Vvi18g1429 619 SMART serkin_6 264 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1429 619 ProSiteProfiles Protein kinase domain profile. 264 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1429 619 Pfam Protein kinase domain 267 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1429 619 ProSitePatterns Protein kinases ATP-binding region signature. 270 292 IPR017441 GO:0005524
Vvi18g1429 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Vvi18g1429 619 MobiDBLite consensus disorder prediction 548 567 - -
Vvi18g1429 619 Gene3D Transferase(Phosphotransferase) domain 1 339 554 - -
Vvi18g1429 619 FunFam S-receptor-like serine/threonine-protein kinase 237 338 - -
Vvi18g1429 619 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 548 - -
Vvi18g1429 619 Pfam S-locus glycoprotein domain 10 72 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1429 Vvi-Chr18 17398159 17400018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1429 239 548 Receptor kinase-like Gene Family AT5G20050 44.582 4.04e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi18g1429 Pkinase 1.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1429 - - vvi:100266623 1222.61