Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1425 ATGGGAAGGAAGAAAACAGAGGATAGTGGTGCAACCACAAAGGTTAAGCCTAGCAACAAAGATGCCTCCAAGGATGGGAAGAAAGAGAAGCTCTCAGTTTCAGCGATGCTTGCTAGCATGGACCAGAAATCTGATAAACCCAAAAAGGGATCTTCCTCCTCAAGCACTACCACTAGCAAGCCCAAAGCAAAAGCAGCTCCAAAACTTCCATCCTACACTGCTGACATCGACCTCCCTCCCTCTGATGATGAGGATGATGCTTATTCCTCTGAAGAAGACGCACGACTTAAGCGGCAACAAAGGGCTGAACTAAAGACACTTGACATATCCGTAACTGAAAAGGAATTGAAGAAACGTGAAAAGAAAGACATGCTTGCTGTCCATGCCTCACAGCAGGCCCGACAGGAGGCCCTTAAGGATGATCATGATGCATTCACCGTTGTTATTGGTAGCCGGGCTTCAGTTCTTGATGGCGAAGATGAAGCTGATGCTAATGTCAAAGATGTAACGATAGAAAACTTTTCTGTGTCAGCACGTGGGAAAGAACTCTTAAAGAATGCATCAGTGAAGATATCTCATGGGAAGAGGTATGGTTTAGTTGGACCAAATGGGATGGGAAAATCTACATTATTAAAACTTCTTGCTTGGAGGAAGATTCCAGTACCTAAAAATATTGATGTACTACTGGTTGAGCAAGAGGTGATTGGTGACGATAATACTGCCCTTCAGGCAGTTATTTCAGCGAACGAAGAGCTGGTCAGGCTCCGACAGGAAGTTGCATCTTTGGATTCTTTGCAGAATTCATCTGCTGCCACTTGTGACGAGGATGAAAATGATGTGAGTGGGGATGATGTGGGAGAAAAGCTTGCTGAACTGTATGAGAATTTGCAGCTTTTGGGGTCTGATGCTGCTGAGGCTCAGGCATCAAAGATTCTTGCTGGACTGGGTTTCACTAAGGATATGCAGGGCCGTGCAACCCGGTCATTTAGTGGTGGGTGGAGGATGAGAATTTCATTGGCTAGGGCACTCTTTGTGCAGCCAACTCTTCTATTGCTTGATGAACCCACCAACCATCTTGACCTGAGGGCTGTTCTCTGGTTAGAGGAGTACTTGTGCCGGTGGAAGAAAACTCTTGTTGTCGTCTCGCATGATCGGGATTTTCTTAACACGGTTTGTAGTGAGATTATTCATCTCCATGACCAGAAACTTCATTTCTACCGGGGGAACTTTGATGATTTTGAAAGTGGGTATGAGCAGCGTCGCAAGGAGATGAATAAGAAGTTCGAGATTTATGATAAGCAAGTGAAAGCTGCAAAGAGAACAGGCAATCGGGTTCAGCAGGAGAAGGTTAAGGATAGAGCTAAGTTTGCTGCTGCTAAGGAAGCATCAAAGAATAAGGCCAAGGGTAAGGTTGACGATGATGAGCCTCCACCAGAGGCCCCAAAGAAGTGGAGAGATTACAGTGTGGAGTTCCACTTCCCTGAACCCACTGAGTTAACCCCACCACTCTTACAGCTCATTGAAGTCAGTTTCAGCTATCCAAACAGGGAGGATTTCAGGCTATCGGATGTTGATGTTGGTATTGATATGGGGACTCGTGTTGCCATTGTTGGACCCAATGGAGCTGGGAAATCTACATTGCTTAATCTTCTTGCTGGTGATTTGGTTCCGACGGAGGGTGAAGTACGAAGGAGTCAAAAACTGAGGATTGGGAGGTACTCACAACACTTTGTGGACCTTCTGACAATGGATGAAACACCAGTTCAGTATCTTCTCAGGCTTCATCCAGATCAGGAGGGACTTAGCAAGCAGGAAGCCGTTCGTGCAAAGCTTGGGAAATTTGGGCTTCCCAGTCATAACCACCTCACCCCAATTATGAAACTATCGGGAGGGCAGAAAGCACGGGTTGTCTTCACATCAATTTCTATGTCAAAACCACACATTTTGCTGTTGGATGAGCCTACAAATCATCTAGACATGCAGAGCATTGATGCATTGGCTGATGCACTAGATGAGTTCAGTGGTGGAGTGGTGCTTGTAAGTCATGATTCGCGGTTAATATCTCGTGTGTGTGAGAACGAGGAGAGAAGTGAAATTTGGGTGGTAGAAAACGGAACTGTGAGTAGTTTCCCTGGATCATTTGAGGAGTACAAGGAAGAGCTACAGAGAGAGATCAAAGCAGAGGTTGATGATTGA 2196 0.4572 MGRKKTEDSGATTKVKPSNKDASKDGKKEKLSVSAMLASMDQKSDKPKKGSSSSSTTTSKPKAKAAPKLPSYTADIDLPPSDDEDDAYSSEEDARLKRQQRAELKTLDISVTEKELKKREKKDMLAVHASQQARQEALKDDHDAFTVVIGSRASVLDGEDEADANVKDVTIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGDDNTALQAVISANEELVRLRQEVASLDSLQNSSAATCDEDENDVSGDDVGEKLAELYENLQLLGSDAAEAQASKILAGLGFTKDMQGRATRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYDKQVKAAKRTGNRVQQEKVKDRAKFAAAKEASKNKAKGKVDDDEPPPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIMKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFSGGVVLVSHDSRLISRVCENEERSEIWVVENGTVSSFPGSFEEYKEELQREIKAEVDD* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1425 731 Gene3D - 474 731 IPR027417 -
Vvi18g1425 731 MobiDBLite consensus disorder prediction 457 482 - -
Vvi18g1425 731 Pfam ABC transporter 184 357 IPR003439 GO:0005524
Vvi18g1425 731 Pfam ABC transporter 521 656 IPR003439 GO:0005524
Vvi18g1425 731 CDD ABCF_EF-3 169 402 - -
Vvi18g1425 731 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 169 432 IPR003439 GO:0005524
Vvi18g1425 731 SMART AAA_5 530 706 IPR003593 GO:0016887
Vvi18g1425 731 SMART AAA_5 193 409 IPR003593 GO:0016887
Vvi18g1425 731 CDD ABCF_EF-3 504 706 - -
Vvi18g1425 731 Gene3D - 166 459 IPR027417 -
Vvi18g1425 731 FunFam ABC transporter F family member 4 469 731 - -
Vvi18g1425 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 710 IPR027417 -
Vvi18g1425 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 422 IPR027417 -
Vvi18g1425 731 FunFam ABC transporter F family member 4 167 453 - -
Vvi18g1425 731 Coils Coil 421 441 - -
Vvi18g1425 731 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 504 729 IPR003439 GO:0005524
Vvi18g1425 731 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 141 725 - -
Vvi18g1425 731 ProSitePatterns ABC transporters family signature. 329 343 IPR017871 GO:0005524|GO:0016887
Vvi18g1425 731 MobiDBLite consensus disorder prediction 1 99 - -
Vvi18g1425 731 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1425 Vvi-Chr18 16304728 16306923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1425 503 708 Calmodulin-binding Proteins AT2G36910 28.879 4.15e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1425 K06184 - vvi:100241016 1338.17