Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1424 ATGCATGCTAACTTTTCCTTAAATCCCATAAGCAATGTCAGCCCTTGCGCCGATGACCTCAAGAGCATCCTCGGATCGGTTGGAGCTGAAACTGATGATGATGGGATTGAGCTGCTGTTGTCCGAAGTTAAGGGTAAGGATATAACAAAGCTTATTGCATCTAGAAGAGAGAAATTGGCATCGGTGCCTTCTGGTGGTGGTGTCGTTGTTGCAGCTAGTGATGGTGGTAGTGGTGCAGCACCTGCTGCCACAGAACCAAAGAATGAGGAAAAAGGTGGAAGAGAAAGAGGAATCGGATGA 300 0.4733 MHANFSLNPISNVSPCADDLKSILGSVGAETDDDGIELLLSEVKGKDITKLIASRREKLASVPSGGGVVVAASDGGSGAAPAATEPKNEEKGGRERGIG* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1424 99 CDD Ribosomal_P2 12 91 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vvi18g1424 99 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 12 90 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vvi18g1424 99 FunFam 60S acidic ribosomal protein P2 4 56 - -
Vvi18g1424 99 Gene3D - 9 55 IPR038716 -
Vvi18g1424 99 MobiDBLite consensus disorder prediction 72 99 - -
Vvi18g1424 99 Pfam 60s Acidic ribosomal protein 15 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1424 Vvi-Chr18 16296859 16297485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1424 14 67 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 74.074 1.52e-21 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1424 K02943 - vvi:100241998 104.375