Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1420 ATGAAGACAAGGCAGGAAAGGTATGGAAAGGTGTTTAAATCTTTGGTGTTGGGGAGATTCACTGTCTTTATGACCGGGAGGGAAGCAAGCAAGATATTGTTGACAGGAAAAGATGGGATGGTGAGCTTGAACCTCTTCTATACTGGGAAGCAGGTGCTAGGCCCCACTAGCTTACTCCAAACCACTGGTGAAGCACACAAGCGCCTTAGGCATCTAATCGCTGAGCCTCTATCACTTGATGGCCTAAAAAAGCATTTCCAGTTCATCAACACTCTGGCAATTGAAACATTGGATCAGTGGGCTGGAAGAAAAGTGTTGGTTCTTGAAGAGGCTTCTACATTCACTCTCAAGGTGATAGGAAACATGATAATGAGCCTGGAGCCCACTGGTGAGGAACAAGAAAAATTTCGGGCTAATTTCAAAATCATCTCCTCCTCATTTGCATCCTTGCCATTCAAAATTCCAGGAACAGCTTTTCATCGCGGTATGAAGGCTCGTGATAGGATGTATGTCATGTTAGACTCGATAATTCAGAGAAGGAGAAATGGCAAAGAATACCGACAAGATTTCTTGGAATCTCTAATAAAGAAGCATAGCAAAGAAGGCGGGGACAAAGAAGATGACGATAACAAACTCACAGATAATCAATTGAAGGACAATATATTGACTCTGCTAGTTGCAGGCCATGATACCACAACTGCTGCACTCACATGGCTCATCAAATTCCTTGAAGAAAATCCACCTGAGGAACATAAGGAAATTCAAGCTAATGGGAATGGTGGAACAAATCTCACCTGGACTGAAGTCAGTCACATGCCTTACACAAACAAAGTGATTAATGAAACACTCCGGAGAGCCACAATTCTGCCTTGGTTTTCAAGAAAAGCTGCTCAGGACTTCAAGATTGATGGATACCAAATCAAGAAAGGATGGTCTGTTAACTTGGATGTTGTTTCTATTCACCATGATCCGGAAGTTTTCCCAGATCCTCAGAAGTTCAATCCCTCCAGATTTGATGCAATCCTGAGGCCTTTCAGCTTCCTTGGATTTGGTAGTGGACCTCGTATGTGTCCTGGAATCAACCTGGCCAGACTGGAAATCTCCATTTTCATTCACCACCTGGTCTGCAGATACAAGTGGAGACCTCTTGAGAAGGATGACTCTGTCCAGGCAACGCTTGTCCGAATGCCAAAGAATAAGTACCCAATTTTGGTTGACCCACTGTAA 1227 0.436 MKTRQERYGKVFKSLVLGRFTVFMTGREASKILLTGKDGMVSLNLFYTGKQVLGPTSLLQTTGEAHKRLRHLIAEPLSLDGLKKHFQFINTLAIETLDQWAGRKVLVLEEASTFTLKVIGNMIMSLEPTGEEQEKFRANFKIISSSFASLPFKIPGTAFHRGMKARDRMYVMLDSIIQRRRNGKEYRQDFLESLIKKHSKEGGDKEDDDNKLTDNQLKDNILTLLVAGHDTTTAALTWLIKFLEENPPEEHKEIQANGNGGTNLTWTEVSHMPYTNKVINETLRRATILPWFSRKAAQDFKIDGYQIKKGWSVNLDVVSIHHDPEVFPDPQKFNPSRFDAILRPFSFLGFGSGPRMCPGINLARLEISIFIHHLVCRYKWRPLEKDDSVQATLVRMPKNKYPILVDPL* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1420 408 FunFam Cytochrome P450 family 722 subfamily A polypeptide 1 1 408 - -
Vvi18g1420 408 PRINTS P450 superfamily signature 277 288 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 PRINTS P450 superfamily signature 348 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 PRINTS P450 superfamily signature 227 244 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 SUPERFAMILY Cytochrome P450 4 405 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 PANTHER CYTOCHROME P450 26 6 382 - -
Vvi18g1420 408 Gene3D Cytochrome P450 1 406 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 Pfam Cytochrome P450 3 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 CDD CYP90-like 4 407 - -
Vvi18g1420 408 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 350 359 IPR017972 GO:0005506|GO:0016705
Vvi18g1420 408 PRINTS E-class P450 group I signature 276 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 PRINTS E-class P450 group I signature 357 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 PRINTS E-class P450 group I signature 5 24 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 PRINTS E-class P450 group I signature 216 233 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 PRINTS E-class P450 group I signature 316 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1420 408 PRINTS E-class P450 group I signature 347 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1420 Vvi-Chr18 16219152 16221368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1420 3 388 Cytochrome P450 AT5G45340 35.606 1.83e-83 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1420 - - vvi:109121393 807.364