Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1419 ATGGACCACCACTTCGCCGGAAAGCCCTTGACGGCCAGCCCATTCGGCAACCGGGCCGATATCGACCATATGCCTGACGCTCCATACCGAGGGGCCCACCACCGCCGGGCCCAGTCCGAGACTTTCTTCCGCTTCTCGGACGACATCCTTCTCGACGCCGATGCCGACGTTGATGTCGACTTCAACCTCGATATCATCTCCGACAACACCAACAGTGGAGCTGCCGGCGTCCCAATGGCTGTTGATTCTTCCAAATCAGAGGATTCCAACGGTGGGTACTCCGCTTCGGCCAAGGCCAAGTCGCTGGACCCTATCAACCACTTCCGGAGCTTGTCCGTGGACGCTGACTTTTTTGAGGGTCTGGGGTTCTCGCCGGCGGCTACGGCTGCGGCTGGGGAGAGCTCTGACGGCGGCGGGAAGGCGACTCAGGAGAAGAGGGTGCACCATCACCGGCATAGCAACTCGATGGATGGTTCTACGACGTCGTTTGAGGTTGAATCGTTGATAGGTTCGGATGGTGCGAAGAAGGCTATGGGACCTGATAGACTCGCAGAGCTTGCTTTGATCGATCCCAAGAGAGCTAAAAGGATTCTTGCAAATAGACAATCTGCTGCACGTTCAAAGGAGAGGAAAATACGCTATACTAATGAACTGGAGAGGAAGGTGCAGACACTTCAGACAGAAGCAACCACCCTCTCTGCACAGGTCACTATGCTACAGAGAGATACCACTGGACTGACTGCCGAGAATAAGGAACTCAAACTACGGTTGCAGGCCATGGAGCAACAGGCATCTCTTAGAGAAGCTCTAAATGAAGCATTGAGAGAAGAAGTACAGAGGCTTAAGATCGCAACTGGACAAATCCCAGCTGTCAATGGAAACAGTTTTAACAGAGGGCTGCCTCCACAGTTTTCCTCCCATCCTCAGGCTTTACATCATTTTGGTGCCCAGCAGCAGCAGCAGCAGCTTCACATGCCTCAATCATCTACCAACAACCAATCTCTAAATGGGCAGCCCCAGCCTAGCTTCTTGGACTTCAATCAGAGGGTTTGA 1053 0.5356 MDHHFAGKPLTASPFGNRADIDHMPDAPYRGAHHRRAQSETFFRFSDDILLDADADVDVDFNLDIISDNTNSGAAGVPMAVDSSKSEDSNGGYSASAKAKSLDPINHFRSLSVDADFFEGLGFSPAATAAAGESSDGGGKATQEKRVHHHRHSNSMDGSTTSFEVESLIGSDGAKKAMGPDRLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQASLREALNEALREEVQRLKIATGQIPAVNGNSFNRGLPPQFSSHPQALHHFGAQQQQQQLHMPQSSTNNQSLNGQPQPSFLDFNQRV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1419 350 MobiDBLite consensus disorder prediction 1 27 - -
Vvi18g1419 350 MobiDBLite consensus disorder prediction 128 160 - -
Vvi18g1419 350 CDD bZIP_plant_RF2 193 242 IPR044759 GO:0003700|GO:0006355
Vvi18g1419 350 Coils Coil 215 235 - -
Vvi18g1419 350 MobiDBLite consensus disorder prediction 72 96 - -
Vvi18g1419 350 SUPERFAMILY Leucine zipper domain 192 244 IPR046347 GO:0003700|GO:0006355
Vvi18g1419 350 SMART brlzneu 188 252 IPR004827 GO:0003700|GO:0006355
Vvi18g1419 350 FunFam Transcription factor VIP1 191 244 - -
Vvi18g1419 350 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 190 253 IPR004827 GO:0003700|GO:0006355
Vvi18g1419 350 Coils Coil 243 287 - -
Vvi18g1419 350 MobiDBLite consensus disorder prediction 314 350 - -
Vvi18g1419 350 MobiDBLite consensus disorder prediction 72 98 - -
Vvi18g1419 350 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 11 336 - -
Vvi18g1419 350 Pfam Basic region leucine zipper 190 241 IPR004827 GO:0003700|GO:0006355
Vvi18g1419 350 Gene3D - 191 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1419 Vvi-Chr18 16209748 16217640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1419 19 349 bZIP Transcription Factor Family AT1G43700 52.394 1.58e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi18g1419 bZIP_2 3.9e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1419 K20557 - vvi:100241011 654.825