Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1417 | ATGGGTCGAAAGAAGCCTACCACCCGGGATGAAGAGCCCGCCGCCGCCACCGGAAACACCAAGTCGAAGAAGAAGGCGCAAGTAATCGACGATGACGAGTACTCGATCGGGACTGAGTTCTCAGAGGAACCGCCGGCTCTGGAGGAGAAAGTTGAGCCGGTTGCCGGAAAAAAGAAGGGCAAGAAGGGAAATTTGAAGTCGGCGTCGCAGCTGAGAGATGATGATCAGGAAGAGTCGGAGGAGGACGAGGATGTGGCGCCGGTTGTCTTCGATGGGAAGAAGAAGGGGAAGCCGAAGAAAACTGGTAATAGTAGTGGTTTCAGTGCATTGCTTGTGGAGGATGATAACGATCAAGGGTCTGGATTGAATGAGGATAGAGATGAAGGGAGTGAGGGAGAAGATGGGAGTGTGGTGAGTTTTTCGGGTAAGAAGAAGTCATCGAAGAAATCTTCGAAGAAGAGTAGTAGTAGTTTGTTAAGCGCAGGCTCCTTCGGAGCCGTTGATGATGGCGATGATGATGAAGATGAATCAAATAAATCAGAGAATGATGATCCTCCAGTAATTGCTTTTACTGGGAAGAAGAAGTCATCCAAAGGTAATAAGAAAGGTGGAGTTTCGAGTTTTGATGTTTTGGATGAAGCAGATGGAATTGATAGTACAATTTCAGAGCAACAATCTGTAGATGAGGCTGATGACGCTCCTGTAATTTTTACTGGAAAGAAGAAGTCATCCAAAGCGAATAAAAAAGGTGGTGGCAATGTATTTGCGGCCTCTAGTTTTGAGGGACTTGGTGAAGGGGATAAGGATAGTGATGAGAAGAATGAAGAGGATGAAGATATTGCTTCTATTGCTTTTTCTGGCAAGAAAAAGTCTTCTAATTCTTCCAAGAAGACTAGTAATATATTTAGTGTTGCATCGGATGATGAGGATAAGGATGAAGATGTTTCTGTATCAGAAGCTGCTCAGGTAGAAGATGAGGAAGATGCCTCAAAGATTGCCTTTTCAGGGAAGAAGAAGTCTTCGAAGAAGAAGAATAATAATGTTCTTTCTGAAACTGGGCTTGGAACTGATCTTGCAGATGTAGTGGAATCTGAACAACCTAGTGTTGGAACAGTTGATAATGAAGGTAATGATTCCAAAAGTAATAAACAGGTAAGTGGAGTGGTGGAAACTTCAAAGAACAAGAAGAAAAAAAAAAAGAGTGGAAGAACTGCACAAGAAGAGGATGACTTGGATAAAATTCTTGCAGAGCTAGGTGAAGGGTCGTCTTCTCTGAAACCTACTACTCCACAAGAGGAGAAAGTTCAGGTTCAGCCCGAACCAGTCCAAGCAGCAGATGCTACAGTTGAAAAAGAAGGTGAAGAAGAAGGTGTGGAGTCTGCTGCAGCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAAGAGAAGAAGGCAGCAGCAGCAGCAGCTGCTGCGGGTGCAGTGGAGGTCAAGGAAGAAAAACAGGTTGAAACAAAGAGTAAAGTTCCGGACAAGAAATTACCAAAACATGTAAGGGAGATGCAAGAGGCACTTGCTAGGCGCAAAGAAGCAGAAGAGAGGAAGAAAAGAGAAGAGGAGGAGAGACTAAGGAAGGAAGAAGAAGAACGGCGACGACAAGAAGAACTTGAGAGGTTGGCTGAGGAGGCCAAGCGCAGGAAAAAGGAAAGGGAAAAGGAAAAGCTTTTGAAGAAGAAACAGGAAGGTAAATTGTTGACAGGAAAGCAGAAAGAAGAAGCCCGTAGGAGGGAGGCAATGAGGAACCAAATACTGGCCAATGCAGGAGGTTTGCCCATCTCTACTGGTGATGCACCAACAAAACGGCCCAAGTATCAGACGAAGAAGGTGAAGTCACATCCCTCTCAAGCAAATGGTGCTGCCCCTTCTAAGCCAGATGAAAACACCGAAGCAAAGGAAAGCCTGCCAGAAACTGTGTCTGAGGTGGATTCCTTGGAACCAGAGAAGCTTGAAGAAGTGGACTCAGTGGATGTTGAGGAGAAATTGGAAATCACTAATGCAACTGAAGAGAATGGGGTTGAAGAAGAAGAAGATGATGAAGAATGGGATGCAAAGAGCTGGGATGATGCAGTAGTCACACTGCCTGATAAAAGTGCATTTGCTGATGAAGAGGCTGACTCTGAGACTGAGCCTGTGGTGAGAAAAGAGACGAAGGTTGCAGCACTGCCTGCATCTCGCAATGTTGGGGTCACAACTGCTGCTGCCAAGACCTCCATTGTGCCAAAAACAGCTGTTCCTACCCAGCCAATCAAGACTCAGGATGTTAGAAGTGAGAAAAGCCAGATCGAGATTGAAGTTACAAATAAAAGTAGGAAAAAAGCAGCACCAAGTTCAGATGCCTCTCCCCAAGGAACTGAAGAGAACCTTCGTTCTCCAATTTGCTGCATCATGGGTCATGTTGATACTGGTAAAACCAAGCTGCTAGATTGTATTCGAGGCACTAATGTTCAGGAAGGTGAGGCTGGGGGTATCACACAACAAATTGGTGCAACATATTTCCCTGCAGAAAACATAAGGGAGAGAACTAAGGAACTGAAAGCTGATGCAAATCTGAAGGTCCCTGGTCTATTGGTTATTGATACCCCTGGGCATGAATCCTTCACTAATTTGCGGTCCCGGGGTTCAGGCTTATGTGACATTGCGATTTTGGTGGTGGATATTATGCATGGATTAGAACCGCAAACAATAGAATCTCTCAATCTTTTAAAAATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGGTGGACAGATTATATGGGTGGAAAGTTTGCCGCAATTCTCCAATTCAGAAGGCAATGAAGCAACAGTCTAAGGATGTACAAAATGAGTTCAATATGCGGCTCACTCAGATCATCACACAGTTCAAGGAACAAGGATTAAATACTGAGTTGTACTATAAGAACAAAGAAATGGGGGAAACTTTCAGTATTGTACCTACTAGTGCAATCAGTGGTGAAGGCATCCCAGACCTATTGCTATTATTGGTTCATTGGACTCAGAAAACAATGGTTGAGAAACTCACATACAGCAGTGAAGTGCAGTGTACGGTGTTGGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGGGCCCTATTGTTGCCACAATTCGAGCTTTATTGACACCACATCCAATGAAGGAACTTCGTGTCAAGGGAACTTATTTGCATCATAAGCAAATCAAGGCTGCACAAGGTATCAAGATCACCGCACAGGGCCTTGAGCATGCCATTGCGGGAACTGGTCTATATGTGGTAGGGCCTGATGATGATTTGGAAGATATCAAGGAAGCAGCCATGGAAGATATGAAGTCAGTCTTGAGTAGGATTGACAAGAGTGGTGAAGGAGTTTATGTTCAAGCATCTACTCTTGGGTCCTTGGAAGCATTGCTGGAGTTCTTAAAGAGTCCAGCAGTGAGTATTCCTGTTAGTGGTATAGGCATTGGCCCTGTACATAAAAAGGATGTCATGAAGGCTAGTGTCATGCTTGAGAAGAAGAAGGAATATGCTACTATCTTGGCATTTGATGTCAAAGTGACCCCTGAGGCTCGAGAACTTGCAGATGATATGGGTGTGAAGATATTTATTGCTGATATAATTTATCACTTGTTTGATCAGTTTAAGGCCTATATCGATAATCTCAAAGAGGAAAAGAAGAGGGAAGCTGCTGATGAAGCAGTCTTTCCATGTGTTCTTAAAATTATGCCCAACTGTATTTTCAACAAGAAGGATCCAATTGTTTTGGGAGTCGATGTTCTTGAAGGGATTGCAAAGGTTGGGACTCCAATTTGTATTCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGATAACCAGCACCAATCCTGAGGAGCAGCAAAAGATGTTTGGAAGGCATTTTGAGATGGAGGATGAACTTGTCAGCCATATCAGCAGAAAGTCAATTGATACACTTAAAGCTAATTACCGAGATGATCTGTCTCTTGATGAGTGGAAGTTGGTTGTGAAACTGAAAACCCTCTTCAAGATACAATGA | 4182 | 0.4383 | MGRKKPTTRDEEPAAATGNTKSKKKAQVIDDDEYSIGTEFSEEPPALEEKVEPVAGKKKGKKGNLKSASQLRDDDQEESEEDEDVAPVVFDGKKKGKPKKTGNSSGFSALLVEDDNDQGSGLNEDRDEGSEGEDGSVVSFSGKKKSSKKSSKKSSSSLLSAGSFGAVDDGDDDEDESNKSENDDPPVIAFTGKKKSSKGNKKGGVSSFDVLDEADGIDSTISEQQSVDEADDAPVIFTGKKKSSKANKKGGGNVFAASSFEGLGEGDKDSDEKNEEDEDIASIAFSGKKKSSNSSKKTSNIFSVASDDEDKDEDVSVSEAAQVEDEEDASKIAFSGKKKSSKKKNNNVLSETGLGTDLADVVESEQPSVGTVDNEGNDSKSNKQVSGVVETSKNKKKKKKSGRTAQEEDDLDKILAELGEGSSSLKPTTPQEEKVQVQPEPVQAADATVEKEGEEEGVESAAAKKKKKKKEKEKEKKAAAAAAAAGAVEVKEEKQVETKSKVPDKKLPKHVREMQEALARRKEAEERKKREEEERLRKEEEERRRQEELERLAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEARRREAMRNQILANAGGLPISTGDAPTKRPKYQTKKVKSHPSQANGAAPSKPDENTEAKESLPETVSEVDSLEPEKLEEVDSVDVEEKLEITNATEENGVEEEEDDEEWDAKSWDDAVVTLPDKSAFADEEADSETEPVVRKETKVAALPASRNVGVTTAAAKTSIVPKTAVPTQPIKTQDVRSEKSQIEIEVTNKSRKKAAPSSDASPQGTEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADANLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKVCRNSPIQKAMKQQSKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVHWTQKTMVEKLTYSSEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVATIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDIKEAAMEDMKSVLSRIDKSGEGVYVQASTLGSLEALLEFLKSPAVSIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADDMGVKIFIADIIYHLFDQFKAYIDNLKEEKKREAADEAVFPCVLKIMPNCIFNKKDPIVLGVDVLEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDIAKKGQRVAIKITSTNPEEQQKMFGRHFEMEDELVSHISRKSIDTLKANYRDDLSLDEWKLVVKLKTLFKIQ* | 1394 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1417 | 1393 | CDD | IF2_aeIF5B_IV | 1264 | 1359 | - | - | |
Vvi18g1417 | 1393 | Gene3D | Translation factors | 1256 | 1393 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 638 | 680 | - | - | |
Vvi18g1417 | 1393 | FunFam | Eukaryotic translation initiation factor 5B | 1256 | 1393 | - | - | |
Vvi18g1417 | 1393 | Pfam | Elongation factor Tu domain 2 | 1040 | 1115 | IPR004161 | GO:0005525 | |
Vvi18g1417 | 1393 | Coils | Coil | 507 | 574 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 681 | 697 | - | - | |
Vvi18g1417 | 1393 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 801 | 1092 | IPR027417 | - | |
Vvi18g1417 | 1393 | FunFam | eukaryotic translation initiation factor 5B | 1024 | 1143 | - | - | |
Vvi18g1417 | 1393 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 801 | 1017 | IPR000795 | GO:0003924|GO:0005525 | |
Vvi18g1417 | 1393 | Coils | Coil | 458 | 483 | - | - | |
Vvi18g1417 | 1393 | Gene3D | - | 795 | 1023 | IPR027417 | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 1 | 703 | - | - | |
Vvi18g1417 | 1393 | NCBIfam | small GTP-binding protein domain | 806 | 930 | IPR005225 | GO:0005525 | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 367 | 389 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 768 | 784 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 422 | 436 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 401 | 416 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 286 | 302 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 785 | 799 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 447 | 466 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 307 | 323 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 490 | 592 | - | - | |
Vvi18g1417 | 1393 | Gene3D | Translation factors | 1024 | 1142 | - | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 761 | 799 | - | - | |
Vvi18g1417 | 1393 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 352 | 1389 | IPR015760 | - | |
Vvi18g1417 | 1393 | MobiDBLite | consensus disorder prediction | 43 | 59 | - | - | |
Vvi18g1417 | 1393 | CDD | aeIF5B_II | 1025 | 1135 | - | - | |
Vvi18g1417 | 1393 | PRINTS | GTP-binding elongation factor signature | 885 | 896 | IPR000795 | GO:0003924|GO:0005525 | |
Vvi18g1417 | 1393 | PRINTS | GTP-binding elongation factor signature | 921 | 930 | IPR000795 | GO:0003924|GO:0005525 | |
Vvi18g1417 | 1393 | PRINTS | GTP-binding elongation factor signature | 805 | 818 | IPR000795 | GO:0003924|GO:0005525 | |
Vvi18g1417 | 1393 | PRINTS | GTP-binding elongation factor signature | 869 | 879 | IPR000795 | GO:0003924|GO:0005525 | |
Vvi18g1417 | 1393 | SUPERFAMILY | Translation proteins | 1260 | 1392 | IPR009000 | - | |
Vvi18g1417 | 1393 | CDD | IF2_eIF5B | 804 | 1014 | - | - | |
Vvi18g1417 | 1393 | FunFam | Eukaryotic translation initiation factor 5B | 795 | 1023 | - | - | |
Vvi18g1417 | 1393 | Pfam | Elongation factor Tu GTP binding domain | 805 | 1012 | IPR000795 | GO:0003924|GO:0005525 | |
Vvi18g1417 | 1393 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 1126 | 1255 | IPR036925 | - | |
Vvi18g1417 | 1393 | Pfam | Translation-initiation factor 2 | 1130 | 1242 | IPR023115 | - | |
Vvi18g1417 | 1393 | Gene3D | - | 1143 | 1249 | IPR036925 | - | |
Vvi18g1417 | 1393 | FunFam | Eukaryotic translation initiation factor 5B | 1143 | 1249 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi18g1417 | Vvi-Chr18 | 16149212 | 16161492 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi18g1417 | 1 | 40 | Eukaryotic Initiation Factors Gene Family | AT1G76810 | 58.696 | 5.34e-06 | 49.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1417 | K03243 | - | vvi:100242745 | 2268.04 |