Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1417 ATGGGTCGAAAGAAGCCTACCACCCGGGATGAAGAGCCCGCCGCCGCCACCGGAAACACCAAGTCGAAGAAGAAGGCGCAAGTAATCGACGATGACGAGTACTCGATCGGGACTGAGTTCTCAGAGGAACCGCCGGCTCTGGAGGAGAAAGTTGAGCCGGTTGCCGGAAAAAAGAAGGGCAAGAAGGGAAATTTGAAGTCGGCGTCGCAGCTGAGAGATGATGATCAGGAAGAGTCGGAGGAGGACGAGGATGTGGCGCCGGTTGTCTTCGATGGGAAGAAGAAGGGGAAGCCGAAGAAAACTGGTAATAGTAGTGGTTTCAGTGCATTGCTTGTGGAGGATGATAACGATCAAGGGTCTGGATTGAATGAGGATAGAGATGAAGGGAGTGAGGGAGAAGATGGGAGTGTGGTGAGTTTTTCGGGTAAGAAGAAGTCATCGAAGAAATCTTCGAAGAAGAGTAGTAGTAGTTTGTTAAGCGCAGGCTCCTTCGGAGCCGTTGATGATGGCGATGATGATGAAGATGAATCAAATAAATCAGAGAATGATGATCCTCCAGTAATTGCTTTTACTGGGAAGAAGAAGTCATCCAAAGGTAATAAGAAAGGTGGAGTTTCGAGTTTTGATGTTTTGGATGAAGCAGATGGAATTGATAGTACAATTTCAGAGCAACAATCTGTAGATGAGGCTGATGACGCTCCTGTAATTTTTACTGGAAAGAAGAAGTCATCCAAAGCGAATAAAAAAGGTGGTGGCAATGTATTTGCGGCCTCTAGTTTTGAGGGACTTGGTGAAGGGGATAAGGATAGTGATGAGAAGAATGAAGAGGATGAAGATATTGCTTCTATTGCTTTTTCTGGCAAGAAAAAGTCTTCTAATTCTTCCAAGAAGACTAGTAATATATTTAGTGTTGCATCGGATGATGAGGATAAGGATGAAGATGTTTCTGTATCAGAAGCTGCTCAGGTAGAAGATGAGGAAGATGCCTCAAAGATTGCCTTTTCAGGGAAGAAGAAGTCTTCGAAGAAGAAGAATAATAATGTTCTTTCTGAAACTGGGCTTGGAACTGATCTTGCAGATGTAGTGGAATCTGAACAACCTAGTGTTGGAACAGTTGATAATGAAGGTAATGATTCCAAAAGTAATAAACAGGTAAGTGGAGTGGTGGAAACTTCAAAGAACAAGAAGAAAAAAAAAAAGAGTGGAAGAACTGCACAAGAAGAGGATGACTTGGATAAAATTCTTGCAGAGCTAGGTGAAGGGTCGTCTTCTCTGAAACCTACTACTCCACAAGAGGAGAAAGTTCAGGTTCAGCCCGAACCAGTCCAAGCAGCAGATGCTACAGTTGAAAAAGAAGGTGAAGAAGAAGGTGTGGAGTCTGCTGCAGCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAAGAGAAGAAGGCAGCAGCAGCAGCAGCTGCTGCGGGTGCAGTGGAGGTCAAGGAAGAAAAACAGGTTGAAACAAAGAGTAAAGTTCCGGACAAGAAATTACCAAAACATGTAAGGGAGATGCAAGAGGCACTTGCTAGGCGCAAAGAAGCAGAAGAGAGGAAGAAAAGAGAAGAGGAGGAGAGACTAAGGAAGGAAGAAGAAGAACGGCGACGACAAGAAGAACTTGAGAGGTTGGCTGAGGAGGCCAAGCGCAGGAAAAAGGAAAGGGAAAAGGAAAAGCTTTTGAAGAAGAAACAGGAAGGTAAATTGTTGACAGGAAAGCAGAAAGAAGAAGCCCGTAGGAGGGAGGCAATGAGGAACCAAATACTGGCCAATGCAGGAGGTTTGCCCATCTCTACTGGTGATGCACCAACAAAACGGCCCAAGTATCAGACGAAGAAGGTGAAGTCACATCCCTCTCAAGCAAATGGTGCTGCCCCTTCTAAGCCAGATGAAAACACCGAAGCAAAGGAAAGCCTGCCAGAAACTGTGTCTGAGGTGGATTCCTTGGAACCAGAGAAGCTTGAAGAAGTGGACTCAGTGGATGTTGAGGAGAAATTGGAAATCACTAATGCAACTGAAGAGAATGGGGTTGAAGAAGAAGAAGATGATGAAGAATGGGATGCAAAGAGCTGGGATGATGCAGTAGTCACACTGCCTGATAAAAGTGCATTTGCTGATGAAGAGGCTGACTCTGAGACTGAGCCTGTGGTGAGAAAAGAGACGAAGGTTGCAGCACTGCCTGCATCTCGCAATGTTGGGGTCACAACTGCTGCTGCCAAGACCTCCATTGTGCCAAAAACAGCTGTTCCTACCCAGCCAATCAAGACTCAGGATGTTAGAAGTGAGAAAAGCCAGATCGAGATTGAAGTTACAAATAAAAGTAGGAAAAAAGCAGCACCAAGTTCAGATGCCTCTCCCCAAGGAACTGAAGAGAACCTTCGTTCTCCAATTTGCTGCATCATGGGTCATGTTGATACTGGTAAAACCAAGCTGCTAGATTGTATTCGAGGCACTAATGTTCAGGAAGGTGAGGCTGGGGGTATCACACAACAAATTGGTGCAACATATTTCCCTGCAGAAAACATAAGGGAGAGAACTAAGGAACTGAAAGCTGATGCAAATCTGAAGGTCCCTGGTCTATTGGTTATTGATACCCCTGGGCATGAATCCTTCACTAATTTGCGGTCCCGGGGTTCAGGCTTATGTGACATTGCGATTTTGGTGGTGGATATTATGCATGGATTAGAACCGCAAACAATAGAATCTCTCAATCTTTTAAAAATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGGTGGACAGATTATATGGGTGGAAAGTTTGCCGCAATTCTCCAATTCAGAAGGCAATGAAGCAACAGTCTAAGGATGTACAAAATGAGTTCAATATGCGGCTCACTCAGATCATCACACAGTTCAAGGAACAAGGATTAAATACTGAGTTGTACTATAAGAACAAAGAAATGGGGGAAACTTTCAGTATTGTACCTACTAGTGCAATCAGTGGTGAAGGCATCCCAGACCTATTGCTATTATTGGTTCATTGGACTCAGAAAACAATGGTTGAGAAACTCACATACAGCAGTGAAGTGCAGTGTACGGTGTTGGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGGGCCCTATTGTTGCCACAATTCGAGCTTTATTGACACCACATCCAATGAAGGAACTTCGTGTCAAGGGAACTTATTTGCATCATAAGCAAATCAAGGCTGCACAAGGTATCAAGATCACCGCACAGGGCCTTGAGCATGCCATTGCGGGAACTGGTCTATATGTGGTAGGGCCTGATGATGATTTGGAAGATATCAAGGAAGCAGCCATGGAAGATATGAAGTCAGTCTTGAGTAGGATTGACAAGAGTGGTGAAGGAGTTTATGTTCAAGCATCTACTCTTGGGTCCTTGGAAGCATTGCTGGAGTTCTTAAAGAGTCCAGCAGTGAGTATTCCTGTTAGTGGTATAGGCATTGGCCCTGTACATAAAAAGGATGTCATGAAGGCTAGTGTCATGCTTGAGAAGAAGAAGGAATATGCTACTATCTTGGCATTTGATGTCAAAGTGACCCCTGAGGCTCGAGAACTTGCAGATGATATGGGTGTGAAGATATTTATTGCTGATATAATTTATCACTTGTTTGATCAGTTTAAGGCCTATATCGATAATCTCAAAGAGGAAAAGAAGAGGGAAGCTGCTGATGAAGCAGTCTTTCCATGTGTTCTTAAAATTATGCCCAACTGTATTTTCAACAAGAAGGATCCAATTGTTTTGGGAGTCGATGTTCTTGAAGGGATTGCAAAGGTTGGGACTCCAATTTGTATTCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGATAACCAGCACCAATCCTGAGGAGCAGCAAAAGATGTTTGGAAGGCATTTTGAGATGGAGGATGAACTTGTCAGCCATATCAGCAGAAAGTCAATTGATACACTTAAAGCTAATTACCGAGATGATCTGTCTCTTGATGAGTGGAAGTTGGTTGTGAAACTGAAAACCCTCTTCAAGATACAATGA 4182 0.4383 MGRKKPTTRDEEPAAATGNTKSKKKAQVIDDDEYSIGTEFSEEPPALEEKVEPVAGKKKGKKGNLKSASQLRDDDQEESEEDEDVAPVVFDGKKKGKPKKTGNSSGFSALLVEDDNDQGSGLNEDRDEGSEGEDGSVVSFSGKKKSSKKSSKKSSSSLLSAGSFGAVDDGDDDEDESNKSENDDPPVIAFTGKKKSSKGNKKGGVSSFDVLDEADGIDSTISEQQSVDEADDAPVIFTGKKKSSKANKKGGGNVFAASSFEGLGEGDKDSDEKNEEDEDIASIAFSGKKKSSNSSKKTSNIFSVASDDEDKDEDVSVSEAAQVEDEEDASKIAFSGKKKSSKKKNNNVLSETGLGTDLADVVESEQPSVGTVDNEGNDSKSNKQVSGVVETSKNKKKKKKSGRTAQEEDDLDKILAELGEGSSSLKPTTPQEEKVQVQPEPVQAADATVEKEGEEEGVESAAAKKKKKKKEKEKEKKAAAAAAAAGAVEVKEEKQVETKSKVPDKKLPKHVREMQEALARRKEAEERKKREEEERLRKEEEERRRQEELERLAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEARRREAMRNQILANAGGLPISTGDAPTKRPKYQTKKVKSHPSQANGAAPSKPDENTEAKESLPETVSEVDSLEPEKLEEVDSVDVEEKLEITNATEENGVEEEEDDEEWDAKSWDDAVVTLPDKSAFADEEADSETEPVVRKETKVAALPASRNVGVTTAAAKTSIVPKTAVPTQPIKTQDVRSEKSQIEIEVTNKSRKKAAPSSDASPQGTEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADANLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKVCRNSPIQKAMKQQSKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVHWTQKTMVEKLTYSSEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVATIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDIKEAAMEDMKSVLSRIDKSGEGVYVQASTLGSLEALLEFLKSPAVSIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADDMGVKIFIADIIYHLFDQFKAYIDNLKEEKKREAADEAVFPCVLKIMPNCIFNKKDPIVLGVDVLEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDIAKKGQRVAIKITSTNPEEQQKMFGRHFEMEDELVSHISRKSIDTLKANYRDDLSLDEWKLVVKLKTLFKIQ* 1394
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1417 1393 CDD IF2_aeIF5B_IV 1264 1359 - -
Vvi18g1417 1393 Gene3D Translation factors 1256 1393 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 638 680 - -
Vvi18g1417 1393 FunFam Eukaryotic translation initiation factor 5B 1256 1393 - -
Vvi18g1417 1393 Pfam Elongation factor Tu domain 2 1040 1115 IPR004161 GO:0005525
Vvi18g1417 1393 Coils Coil 507 574 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 681 697 - -
Vvi18g1417 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 801 1092 IPR027417 -
Vvi18g1417 1393 FunFam eukaryotic translation initiation factor 5B 1024 1143 - -
Vvi18g1417 1393 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 801 1017 IPR000795 GO:0003924|GO:0005525
Vvi18g1417 1393 Coils Coil 458 483 - -
Vvi18g1417 1393 Gene3D - 795 1023 IPR027417 -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 1 703 - -
Vvi18g1417 1393 NCBIfam small GTP-binding protein domain 806 930 IPR005225 GO:0005525
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 367 389 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 768 784 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 422 436 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 401 416 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 286 302 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 785 799 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 447 466 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 307 323 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 490 592 - -
Vvi18g1417 1393 Gene3D Translation factors 1024 1142 - -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 761 799 - -
Vvi18g1417 1393 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 352 1389 IPR015760 -
Vvi18g1417 1393 MobiDBLite consensus disorder prediction 43 59 - -
Vvi18g1417 1393 CDD aeIF5B_II 1025 1135 - -
Vvi18g1417 1393 PRINTS GTP-binding elongation factor signature 885 896 IPR000795 GO:0003924|GO:0005525
Vvi18g1417 1393 PRINTS GTP-binding elongation factor signature 921 930 IPR000795 GO:0003924|GO:0005525
Vvi18g1417 1393 PRINTS GTP-binding elongation factor signature 805 818 IPR000795 GO:0003924|GO:0005525
Vvi18g1417 1393 PRINTS GTP-binding elongation factor signature 869 879 IPR000795 GO:0003924|GO:0005525
Vvi18g1417 1393 SUPERFAMILY Translation proteins 1260 1392 IPR009000 -
Vvi18g1417 1393 CDD IF2_eIF5B 804 1014 - -
Vvi18g1417 1393 FunFam Eukaryotic translation initiation factor 5B 795 1023 - -
Vvi18g1417 1393 Pfam Elongation factor Tu GTP binding domain 805 1012 IPR000795 GO:0003924|GO:0005525
Vvi18g1417 1393 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1126 1255 IPR036925 -
Vvi18g1417 1393 Pfam Translation-initiation factor 2 1130 1242 IPR023115 -
Vvi18g1417 1393 Gene3D - 1143 1249 IPR036925 -
Vvi18g1417 1393 FunFam Eukaryotic translation initiation factor 5B 1143 1249 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi18g1417 Vvi-Chr18 16149212 16161492 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1417 1 40 Eukaryotic Initiation Factors Gene Family AT1G76810 58.696 5.34e-06 49.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1417 K03243 - vvi:100242745 2268.04