Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1414 ATGGCCGCTGAATCCGCCGGAAAATCTATTGCTGTCTCTTCTTCGCGCAAGCCCTTCGACTTCTCCCCCGACTCTCCTCCGAGACTCTCCCTCACGCCTGATCAGTTCAAGCACTGCTCCGAAGCTCTCAGATTCTTCAAGGATAAGCTCCAGATGCCGGAGAAGATCCGCCAGGAGTTCGCTTTCTTGCAGGCCAATAGGATGAGACCATCTGAAATGATGAGAAGCTGCACTGTGGCTCTTGACAGTGTCAATTTGAGCAAAAATCGCTACACAGATGTCCTACCATTTGACAAAACCAGGGTTGTTCTCAACTCATGTAAGGATTACAGACCATCAGCTAGGGGCTATATCAATGCAAGCTTCATTGAGACTTCATCCACCGAAAGCATTTCTCGGTTTATAGCTACACAAGGTCCACTGCCACACACCTATGAGGACTTCTGGGAGATGGTAATCCAGTATCATTGTCCTGTTATTGTGATGCTTACTCGGTTGGTTGACAATTACAAGATTCAACTTATTAACAAGTTGTTGTGGCGTCATTCTAGAACTACTACCTCCATCAATAATCAGAGCGCATAG 585 0.4667 MAAESAGKSIAVSSSRKPFDFSPDSPPRLSLTPDQFKHCSEALRFFKDKLQMPEKIRQEFAFLQANRMRPSEMMRSCTVALDSVNLSKNRYTDVLPFDKTRVVLNSCKDYRPSARGYINASFIETSSTESISRFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKIQLINKLLWRHSRTTTSINNQSA* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1414 194 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 51 172 - -
Vvi18g1414 194 Gene3D Protein tyrosine phosphatase superfamily 29 187 IPR029021 -
Vvi18g1414 194 ProSiteProfiles PTP type protein phosphatase domain profile. 56 194 IPR000242 GO:0004725|GO:0006470
Vvi18g1414 194 Pfam Protein-tyrosine phosphatase 85 171 IPR000242 GO:0004725|GO:0006470
Vvi18g1414 194 SMART PTPc_3 55 194 IPR000242 GO:0004725|GO:0006470
Vvi18g1414 194 MobiDBLite consensus disorder prediction 1 30 - -
Vvi18g1414 194 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 39 171 IPR029021 -
Vvi18g1414 194 PRINTS Protein tyrosine phosphatase signature 116 123 IPR000242 GO:0004725|GO:0006470
Vvi18g1414 194 PRINTS Protein tyrosine phosphatase signature 134 154 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1414 Vvi-Chr18 16039781 16053753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1414 34 169 Protein tyrosine phosphatase (PTP) family AT1G71860 67.647 1.96e-65 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1414 - - vri:117906467 337.806