LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1414	ATGGCCGCTGAATCCGCCGGAAAATCTATTGCTGTCTCTTCTTCGCGCAAGCCCTTCGACTTCTCCCCCGACTCTCCTCCGAGACTCTCCCTCACGCCTGATCAGTTCAAGCACTGCTCCGAAGCTCTCAGATTCTTCAAGGATAAGCTCCAGATGCCGGAGAAGATCCGCCAGGAGTTCGCTTTCTTGCAGGCCAATAGGATGAGACCATCTGAAATGATGAGAAGCTGCACTGTGGCTCTTGACAGTGTCAATTTGAGCAAAAATCGCTACACAGATGTCCTACCATTTGACAAAACCAGGGTTGTTCTCAACTCATGTAAGGATTACAGACCATCAGCTAGGGGCTATATCAATGCAAGCTTCATTGAGACTTCATCCACCGAAAGCATTTCTCGGTTTATAGCTACACAAGGTCCACTGCCACACACCTATGAGGACTTCTGGGAGATGGTAATCCAGTATCATTGTCCTGTTATTGTGATGCTTACTCGGTTGGTTGACAATTACAAGATTCAACTTATTAACAAGTTGTTGTGGCGTCATTCTAGAACTACTACCTCCATCAATAATCAGAGCGCATAG	585	0.4667	MAAESAGKSIAVSSSRKPFDFSPDSPPRLSLTPDQFKHCSEALRFFKDKLQMPEKIRQEFAFLQANRMRPSEMMRSCTVALDSVNLSKNRYTDVLPFDKTRVVLNSCKDYRPSARGYINASFIETSSTESISRFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKIQLINKLLWRHSRTTTSINNQSA*	195

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1414	194	PANTHER	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	51	172	-	-
	Vvi18g1414	194	Gene3D	Protein tyrosine phosphatase superfamily	29	187	IPR029021	-
	Vvi18g1414	194	ProSiteProfiles	PTP type protein phosphatase domain profile.	56	194	IPR000242	GO:0004725\|GO:0006470
	Vvi18g1414	194	Pfam	Protein-tyrosine phosphatase	85	171	IPR000242	GO:0004725\|GO:0006470
	Vvi18g1414	194	SMART	PTPc_3	55	194	IPR000242	GO:0004725\|GO:0006470
	Vvi18g1414	194	MobiDBLite	consensus disorder prediction	1	30	-	-
	Vvi18g1414	194	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	39	171	IPR029021	-
	Vvi18g1414	194	PRINTS	Protein tyrosine phosphatase signature	116	123	IPR000242	GO:0004725\|GO:0006470
	Vvi18g1414	194	PRINTS	Protein tyrosine phosphatase signature	134	154	IPR000242	GO:0004725\|GO:0006470

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1414	Vvi-Chr18	16039781	16053753	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g1414	34	169	Protein tyrosine phosphatase (PTP) family	AT1G71860	67.647	1.96e-65	202

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1414	-		-	vri:117906467	337.806

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