LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1410	ATGGAGTTAGCCAAGCCTTCTTCAGTGTTTGCTATTCAAGACCACCAATCCTCTTCTCCTCCCACTCCCATATGGAAAACGGTTGTTGTGGCCTCCATCGCCGCCGGGATTCAGTTCGGATGGGCGTTGCAGCTGTCGTTGCTGACCCCCTACGTTCAGCTTCTCGGCATTCCCCACAAGTGGGCTGCTTTTATCTGGCTCTGTGGTCCCATCTCCGGCATGATTGTGCAGCCGGTAGTTGGTTACCACAGCGACCGCTGCACATCCCGGTTTGGGCGTCGCCGCCCCTTCATCGCCGCCGGGGCTGTTCTCGTTGCCATCGCTGTGTTTCTCATCGGCTACGCAGCCGACATCGGAAGGGTTTCCGGCGACCCCCTCCATAATACTATCAAAACCAGGGCGGTTGCGGTGTTCGTGGTTGGGTTTTGGATTCTGGATGTGGCTAATAATATGCTTCAAGGCCCTTGCCGAGCCCTCCTAGCGGATCTCTCCGGCACCAGCGCTCGGCGGACTCGAACGGCGAACGCGCTGTATTCGTTTTTCATGGCCGTCGGCAACGTCCTCGGCTACGCTGCCGGCTCCTTCAGCAAACTCCACAAGATGTTCCCCTTCGCCAGAACCCAAGCCTGCGACCTCTATTGCGCCAATCTCAAAAGCTGCTTTTTCCTTTCTATCGCGCTTCTTCTAATTCTGACAATCATCGCATTCGCCACCGTGCACGAAACCCCGCTCAACAGAGCCGACATCGCCGTCGTCGAAGCCGGACAACCGTTCTATTCCCAGATGATGAATGCCTTCAGGCAGCTGAGAAGGCCCATGTGGGTGCTTCTCCTTGTGACGTGTCTCAACTGGATTGGCTGGTTCCCTTTCCTTCTCTTCGACACCGATTGGATGGGCAGAGAGGTGTACGGAGGCACCGTCGGAGAAGGCCCCAGAGGAAGGCTGTACGATCTGGGAGTCCGCGCGGGTTCATTGGGGCTGATGCTGAACTCTGTGGTTCTGGGGTTGATGTCTCTCGGAGTTGAGTTCTTTGGCCGTGGGGTTGGCGGCGTGAAGCGCCTCTGGGGTGGCGTCAATTTTCTGCTGGCGCTGTGCTTGGCACTGACGGTACTTGTTAGCAAGTTGGCAGCGTCGTGGCGGCACAGCCTTGGCGGAGAGCTTCACCCACCGCCGATCGGCATCAAGGCTGGAGCGTTATCTCTGTTCGCTGTTATGGGGGTACCTCTTGCGATCACCTACAGCATTCCATTTGCTCTGGCTTCCATATTTTGCCACAGTTCTGGTGCAGGCCAAGGACTTTCTCTTGGAGTTCTAAATCTTGCAATTGTTGTACCGCAGATGATGGTGTCGGTAGCGAGCGGGCCATGGGACGCGCGATTTGGGGGCGGCAACCTTCCCGCGTTTGTAGTAGGTGCGTTTGCAGCCGCGCTGAGCGGAGTGTTGGCGCTGACTATGCTCCCAGCTCCTCCTCCTGATGTCCCTAACACCAAGGATGAGAGGACTCAGCCGTCGTCTTAA	1518	0.5705	MELAKPSSVFAIQDHQSSSPPTPIWKTVVVASIAAGIQFGWALQLSLLTPYVQLLGIPHKWAAFIWLCGPISGMIVQPVVGYHSDRCTSRFGRRRPFIAAGAVLVAIAVFLIGYAADIGRVSGDPLHNTIKTRAVAVFVVGFWILDVANNMLQGPCRALLADLSGTSARRTRTANALYSFFMAVGNVLGYAAGSFSKLHKMFPFARTQACDLYCANLKSCFFLSIALLLILTIIAFATVHETPLNRADIAVVEAGQPFYSQMMNAFRQLRRPMWVLLLVTCLNWIGWFPFLLFDTDWMGREVYGGTVGEGPRGRLYDLGVRAGSLGLMLNSVVLGLMSLGVEFFGRGVGGVKRLWGGVNFLLALCLALTVLVSKLAASWRHSLGGELHPPPIGIKAGALSLFAVMGVPLAITYSIPFALASIFCHSSGAGQGLSLGVLNLAIVVPQMMVSVASGPWDARFGGGNLPAFVVGAFAAALSGVLALTMLPAPPPDVPNTKDERTQPSS*	506

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1410	505	PANTHER	SUGAR TRANSPORTER	23	485	-	-
	Vvi18g1410	505	CDD	MFS_SLC45_SUC	27	484	-	-
	Vvi18g1410	505	Pfam	MFS/sugar transport protein	36	286	-	-
	Vvi18g1410	505	FunFam	Sucrose transport protein	21	486	-	-
	Vvi18g1410	505	NCBIfam	sucrose/proton symporter	23	491	IPR005989	GO:0005886\|GO:0008515\|GO:0015770
	Vvi18g1410	505	Gene3D	MFS general substrate transporter like domains	24	500	IPR036259	-
	Vvi18g1410	505	SUPERFAMILY	MFS general substrate transporter	28	491	IPR036259	-

Showing 1 to 7 of 7 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1410	Vvi-Chr18	15923771	15925870	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g1410	21	497	Sucrose Transporter Gene Family	AT1G22710	68.191	0.0	667

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1410	K15378		-	vvi:100232846	969.148

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