Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1410 ATGGAGTTAGCCAAGCCTTCTTCAGTGTTTGCTATTCAAGACCACCAATCCTCTTCTCCTCCCACTCCCATATGGAAAACGGTTGTTGTGGCCTCCATCGCCGCCGGGATTCAGTTCGGATGGGCGTTGCAGCTGTCGTTGCTGACCCCCTACGTTCAGCTTCTCGGCATTCCCCACAAGTGGGCTGCTTTTATCTGGCTCTGTGGTCCCATCTCCGGCATGATTGTGCAGCCGGTAGTTGGTTACCACAGCGACCGCTGCACATCCCGGTTTGGGCGTCGCCGCCCCTTCATCGCCGCCGGGGCTGTTCTCGTTGCCATCGCTGTGTTTCTCATCGGCTACGCAGCCGACATCGGAAGGGTTTCCGGCGACCCCCTCCATAATACTATCAAAACCAGGGCGGTTGCGGTGTTCGTGGTTGGGTTTTGGATTCTGGATGTGGCTAATAATATGCTTCAAGGCCCTTGCCGAGCCCTCCTAGCGGATCTCTCCGGCACCAGCGCTCGGCGGACTCGAACGGCGAACGCGCTGTATTCGTTTTTCATGGCCGTCGGCAACGTCCTCGGCTACGCTGCCGGCTCCTTCAGCAAACTCCACAAGATGTTCCCCTTCGCCAGAACCCAAGCCTGCGACCTCTATTGCGCCAATCTCAAAAGCTGCTTTTTCCTTTCTATCGCGCTTCTTCTAATTCTGACAATCATCGCATTCGCCACCGTGCACGAAACCCCGCTCAACAGAGCCGACATCGCCGTCGTCGAAGCCGGACAACCGTTCTATTCCCAGATGATGAATGCCTTCAGGCAGCTGAGAAGGCCCATGTGGGTGCTTCTCCTTGTGACGTGTCTCAACTGGATTGGCTGGTTCCCTTTCCTTCTCTTCGACACCGATTGGATGGGCAGAGAGGTGTACGGAGGCACCGTCGGAGAAGGCCCCAGAGGAAGGCTGTACGATCTGGGAGTCCGCGCGGGTTCATTGGGGCTGATGCTGAACTCTGTGGTTCTGGGGTTGATGTCTCTCGGAGTTGAGTTCTTTGGCCGTGGGGTTGGCGGCGTGAAGCGCCTCTGGGGTGGCGTCAATTTTCTGCTGGCGCTGTGCTTGGCACTGACGGTACTTGTTAGCAAGTTGGCAGCGTCGTGGCGGCACAGCCTTGGCGGAGAGCTTCACCCACCGCCGATCGGCATCAAGGCTGGAGCGTTATCTCTGTTCGCTGTTATGGGGGTACCTCTTGCGATCACCTACAGCATTCCATTTGCTCTGGCTTCCATATTTTGCCACAGTTCTGGTGCAGGCCAAGGACTTTCTCTTGGAGTTCTAAATCTTGCAATTGTTGTACCGCAGATGATGGTGTCGGTAGCGAGCGGGCCATGGGACGCGCGATTTGGGGGCGGCAACCTTCCCGCGTTTGTAGTAGGTGCGTTTGCAGCCGCGCTGAGCGGAGTGTTGGCGCTGACTATGCTCCCAGCTCCTCCTCCTGATGTCCCTAACACCAAGGATGAGAGGACTCAGCCGTCGTCTTAA 1518 0.5705 MELAKPSSVFAIQDHQSSSPPTPIWKTVVVASIAAGIQFGWALQLSLLTPYVQLLGIPHKWAAFIWLCGPISGMIVQPVVGYHSDRCTSRFGRRRPFIAAGAVLVAIAVFLIGYAADIGRVSGDPLHNTIKTRAVAVFVVGFWILDVANNMLQGPCRALLADLSGTSARRTRTANALYSFFMAVGNVLGYAAGSFSKLHKMFPFARTQACDLYCANLKSCFFLSIALLLILTIIAFATVHETPLNRADIAVVEAGQPFYSQMMNAFRQLRRPMWVLLLVTCLNWIGWFPFLLFDTDWMGREVYGGTVGEGPRGRLYDLGVRAGSLGLMLNSVVLGLMSLGVEFFGRGVGGVKRLWGGVNFLLALCLALTVLVSKLAASWRHSLGGELHPPPIGIKAGALSLFAVMGVPLAITYSIPFALASIFCHSSGAGQGLSLGVLNLAIVVPQMMVSVASGPWDARFGGGNLPAFVVGAFAAALSGVLALTMLPAPPPDVPNTKDERTQPSS* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1410 505 PANTHER SUGAR TRANSPORTER 23 485 - -
Vvi18g1410 505 CDD MFS_SLC45_SUC 27 484 - -
Vvi18g1410 505 Pfam MFS/sugar transport protein 36 286 - -
Vvi18g1410 505 FunFam Sucrose transport protein 21 486 - -
Vvi18g1410 505 NCBIfam sucrose/proton symporter 23 491 IPR005989 GO:0005886|GO:0008515|GO:0015770
Vvi18g1410 505 Gene3D MFS general substrate transporter like domains 24 500 IPR036259 -
Vvi18g1410 505 SUPERFAMILY MFS general substrate transporter 28 491 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1410 Vvi-Chr18 15923771 15925870 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1410 21 497 Sucrose Transporter Gene Family AT1G22710 68.191 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1410 K15378 - vvi:100232846 969.148