Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1407 ATGGAGGCCACATCTGTAAAAGCAGGTATGCAACCGGCTTCTGAGGACGCCCACCATCATCAATCCACCCCATTAAGCAAGATAATTCTCGTAGCATCCATAGCTGCGGGTGTTCAATTCGGATGGGCTCTTCAGCTTTCCCTCTTGACCCCATATGTTCAGCTCCTCGGCGTCCCTCACACATGGGCTTCCTTCATTTGGCTTTGTGGTCCCATCTCTGGCATGCTCATCCAGCCCACGGTTGGATACTATAGCGACCACTGCAACTCCCAATGGGGGCGGCGGCGCCCATTTATCATTGTTGGCACAATTCTGGTCACTCTTGCGGTTATCCTTATTGGTTTCGCAGCGGACATTGGCAAATCAGCTGGGGATCCTCCTGATAAAGTCCCAAAGGTTCGAGCGGTTGTTGTGTTTGTCCTAGGGTTTTGGGTCCTTGACGTTGCCAATAATATGATGCAGGGCCCTTGCCGAGCTTTATTAGCTGATATGTCTGGGCATAACCACAAGAAAACAAGGACAGCAAACTCGTATTACTCGTTTTTCATGGCGGTCGGGAATGTCCTGGGTTATGCAGCTGGCTCTTATACTGACCTTTATAAGGTCTTCCCATTCACAAAGACAAAGGCTTGTGATGTGTACTGTGCGAACCTTAAAACTTGCTTCATTTTCGCTATTATTCTCCTCCTGGTCTTAACCACTGCAGCTATGACTTTAGTAAAAGAAAGGCCACTTGTTTTAACTCAACAATACAACGCAGACCAGGATGAAGAGGACGAAGAGGAGGTTTCAATGCCATTTTTCGGGCAGATCTTGTCTGCATTAGGGAACTTATCCCGGTCAATGTGGATGCTAATTGTTGTTACATCCTTGAACTGGCTTGCCTGGTTTGGTTTCCTATTGTTTGACACTGACTGGATGGGGAAAGAAGTCTACGGAGGGACGGTCAAAGGTAAAGAATCAAAGCTGTATGATAGGGGTGTACACGCAGGTTCGCTAGGGTTGATGCTGAACTCATTGGTGCTAGGGTTAATGTCATTGGCAATCGAGCCAGCAGCTCGTTTGATGGGTGGTGTGAAGCGGGTATGGGGTATTGGGAACTTCATACTAGCCATTTGCTTGGGACTTACAGTTGCGGTCACAAAGATGGCCCAATCTTCCAGACATGAAGCTGCTGCTGAAGGCAGAAGCTTGATGCCTCCAGCCAACGTTAAGATTTTTGCCTTGACGATCTTCGCCTTGTTGGGCATACCTCAAGCGATCACATACAGTATCCCCTTCGCCCTAGCATCCATATATTCCAATGCCTCTGGTGCTGGCCAAGGCCTTTCTCTAGGAGTTTTAAACATGGCAATAGTGCTACCACAGATACTGGTTTCTGCGGTCAGCGGACTGTTGGATGATTTATTTGGTGGTGGTAACTTACCAGTCTTTGTTGCGGGAGCCATCGCTGCTGCAGCAAGTGGGGTATTTGCACTCACCATTCTACCATCTCCACCGGCGCAACCTTCTAGGCTCTGA 1521 0.4852 MEATSVKAGMQPASEDAHHHQSTPLSKIILVASIAAGVQFGWALQLSLLTPYVQLLGVPHTWASFIWLCGPISGMLIQPTVGYYSDHCNSQWGRRRPFIIVGTILVTLAVILIGFAADIGKSAGDPPDKVPKVRAVVVFVLGFWVLDVANNMMQGPCRALLADMSGHNHKKTRTANSYYSFFMAVGNVLGYAAGSYTDLYKVFPFTKTKACDVYCANLKTCFIFAIILLLVLTTAAMTLVKERPLVLTQQYNADQDEEDEEEVSMPFFGQILSALGNLSRSMWMLIVVTSLNWLAWFGFLLFDTDWMGKEVYGGTVKGKESKLYDRGVHAGSLGLMLNSLVLGLMSLAIEPAARLMGGVKRVWGIGNFILAICLGLTVAVTKMAQSSRHEAAAEGRSLMPPANVKIFALTIFALLGIPQAITYSIPFALASIYSNASGAGQGLSLGVLNMAIVLPQILVSAVSGLLDDLFGGGNLPVFVAGAIAAAASGVFALTILPSPPAQPSRL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1407 506 FunFam Sucrose transport protein 22 496 - -
Vvi18g1407 506 CDD MFS_SLC45_SUC 28 494 - -
Vvi18g1407 506 Pfam MFS/sugar transport protein 35 296 - -
Vvi18g1407 506 NCBIfam sucrose/proton symporter 24 500 IPR005989 GO:0005886|GO:0008515|GO:0015770
Vvi18g1407 506 Gene3D MFS general substrate transporter like domains 25 496 IPR036259 -
Vvi18g1407 506 SUPERFAMILY MFS general substrate transporter 28 500 IPR036259 -
Vvi18g1407 506 PANTHER SUGAR TRANSPORTER 23 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1407 Vvi-Chr18 15866681 15869060 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1407 14 500 Sucrose Transporter Gene Family AT1G22710 64.155 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1407 K15378 - vvi:100253081 933.324