Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1405 ATGAGAGAGCAAATGTTAAAACTCGACCACAAAAGAAAAGGGGTGGTTGAAGATGGAAAAGGCCTTCATTTGATCCATTTGTTGCTTATAACAGCCACTGCAGTCGATGAAAACAACGTGAGCGTGGCTGCGGAGAACCTAAGGGAGCTGTACCAAAGCGTGTGCTTGAACGGCGACTCTGTGCAACGCGTGGTAGCCTATTTCGCAGATGGGTTGGCAGCAAAGCTTCTCACCCGGAAATCCCCCTTCTATGACATGATCATGAAGGAACCGACGCCTGAGGAAGAGTTCTTAGCACACACCGATCTCTACCGCGTGTCTCCATACTACCAATTCGCTCATTTCACAGCAAATCAGGCTATAATCGAAGCATTTGAGGAGGAGGAAGAGAACAACAATCGGGCATTACATGTAGTCGATTTTGATGTCTCATATGGCTTCCAGTGGCCTTCCCTTATACAATCCCTTGCTGAAAAGGCAACCAGTGGAAATCGAATCTCCCTCCGGATAACAGGATTCGGAAGAAGCTTGGACGAGCTACAGGAAACCGAGACTAGGCTGATAAGCTTCTCAAAGGCTTTTCGGAACCTAGTATTTGAGTTCCAAGGGCTATTAAGAGGCTCCAAACTCACTAACCTGAGGAAAAAGAAGAATGAAACAGTTGCCGCAAACCTAGTTTTTCATCTCAACACCTTGACTAGTTTTTTGAAGATTTCAGAAACTTTGAAATCAGTACATTCACTTAACCCCTCCATTGTAATCTTGGTGGAACAAGAAGGAAGCAGAAGCCCCCAAAGCTTCTTATCGAGATTCATGGAGTCTTTGCATTATTTTGCAGCCATGTTTGATTCATTGGATGACTGCCTCCCACTAGAGAAGAGTGGTGGGTTTAGAGTTTTTGAAAGAGATGATGAAAGGGCTATTTCTCTTGGGTGGCAAGATAGGTGTCTGATAACGGCCTCTGCATGGCATTGTATATGA 981 0.4506 MREQMLKLDHKRKGVVEDGKGLHLIHLLLITATAVDENNVSVAAENLRELYQSVCLNGDSVQRVVAYFADGLAAKLLTRKSPFYDMIMKEPTPEEEFLAHTDLYRVSPYYQFAHFTANQAIIEAFEEEEENNNRALHVVDFDVSYGFQWPSLIQSLAEKATSGNRISLRITGFGRSLDELQETETRLISFSKAFRNLVFEFQGLLRGSKLTNLRKKKNETVAANLVFHLNTLTSFLKISETLKSVHSLNPSIVILVEQEGSRSPQSFLSRFMESLHYFAAMFDSLDDCLPLEKSGGFRVFERDDERAISLGWQDRCLITASAWHCI* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1405 326 ProSiteProfiles GRAS family profile. 15 326 IPR005202 -
Vvi18g1405 326 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 287 IPR005202 -
Vvi18g1405 326 Pfam GRAS domain family 24 292 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1405 Vvi-Chr18 15784878 15786089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1405 27 290 GRAS Transcription Factor Family AT2G04890 35.165 9.04e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi18g1405 GRAS 5.9e-69 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1405 - - vvi:100242818 543.888