LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1402	ATGGGAAAATCTACATTATTAAAACTTCTTGCTTGGAGGAAGATTCCAGTACCTAAAAATATTGATGTACTATTGGTTGAGCAAGAGGTGATCGGTGATGATAAAACTGCCCTTCAGGCAGTTATTTCAGCGAACGAAGAGCTAGTCAGGCTCCGACAGGAAGTTGCATCTTTGGATTCTTTGCAGAATTCATCTGCTGCCACTTGCGATGAGGATGAAAAGGATGATGTGAGTGGGGATGACGTGGGAGAAAAGCTTGCTGAACTGTATGAGAAGTTGCAGCTATTGGGGTCTGATGCTGCTGAGGCTCAGGCATCAAAGATTCTTGCTGGACTGGGTTTCACTAAGGAGATGCAGGGCCGTGTAACCCGATCATTTAGTGGTGGGTGGAGGATGAGAATTTCATTGGCTAGGGCACTCTTTGTGCAGCCAACTCTTTTATTGCTGGATGAACCTACCAACCATCTCGACCTTAGGGCTGTTCTCTGGTTAGAGGAGTACTTGTGCCGGTGGAAGAAAACTCTTGTTGTTGTCTCACATGATCGGGATTTTCTTAACACAGTTTGCAGTGAAATTATTCATCTCCATGACCAGAAACTTCACTTCTACCGTGGGAACTTTGATGATTTTGAAAGTGGGTATGAGCAGCGTCGCAAAGAGATGAATAAGAAGTTTGAGATTCATGATAAGCAAGTGAAAGCTGCCAAGAGAACAGGGAATCGGGTCCAGCAAGAGAAGGTTAAGGATAGAGCTAAGTTTGCTGCCGCTAAAGAAGCATCAAAGAATAAGGCAAAGGGCAAGGTTGATGATGATGAGTCTCCACCAGAGGCCCCAAAGAAGTGGAGAGATTACAGTGTGGAGTTCCACTTCCCTCAACCCACTGAGTTAACCCCACCACTCTTACAGCTTATTGAAGTCAGTTTCAGTTATCCGAACAGGGAGGATTTCAGGCTCTCTGAGGTCGATGTTGGTATTGACATGGGGACTCGTGTTGCCATTGTTGGACCCAATGGAGCTGGGAAATCTACATTACTTAATCTTCTTGCTGGTGATTTGGTTCCAACGGAGGGTGAAGTGCGAAGGAGTCAAAAACTGAGGATTGGGAGGTACTCACAGCACTTTGTGGACCTTCTGACAATGGATGAAACGCCGGTTCAGTATCTTCTCAGGCTTCATCCAGATCAGGAGGGACTTAGCAAGCAGGAAGCTGTTCGTGCAAAGCTTGGGAAATTTGGGCTCCCCAGCCATAACCACCTCACCCCAATAATGAAACTATCAGGAGGACAGAAAGCACGGGTTGTCTTCACATCAATTTCCATGTCAAAACCACACATTTTGCTGTTGGATGAGCCCACAAATCATCTAGACATGCAGAGCATTGATGCATTGGCTGACGCACTAGATGAGTTCAGCGGTGGAGTGGTGCTTGTAAGTCATGATTCGCGGTTAATATCTCGTGTGTGTAACGATGAGGAGAAGAGTGAAATTTGGGTAGTAGAAAACGGAACCGTGAGTAGTTTCCCTGAATCATTTGAGGAGTACAAGGAAGAGCTACAGAGAGAGATCAAAGCCGAGGTTGATGATTAA	1587	0.4568	MGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGDDKTALQAVISANEELVRLRQEVASLDSLQNSSAATCDEDEKDDVSGDDVGEKLAELYEKLQLLGSDAAEAQASKILAGLGFTKEMQGRVTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIHDKQVKAAKRTGNRVQQEKVKDRAKFAAAKEASKNKAKGKVDDDESPPEAPKKWRDYSVEFHFPQPTELTPPLLQLIEVSFSYPNREDFRLSEVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIMKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFSGGVVLVSHDSRLISRVCNDEEKSEIWVVENGTVSSFPESFEEYKEELQREIKAEVDD*	529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1402	528	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	301	526	IPR003439	GO:0005524
	Vvi18g1402	528	Coils	Coil	41	61	-	-
	Vvi18g1402	528	CDD	ABCF_EF-3	301	503	-	-
	Vvi18g1402	528	SMART	AAA_5	1	206	IPR003593	GO:0016887
	Vvi18g1402	528	SMART	AAA_5	327	503	IPR003593	GO:0016887
	Vvi18g1402	528	Gene3D	-	1	254	IPR027417	-
	Vvi18g1402	528	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	1	222	IPR003439	GO:0005524
	Vvi18g1402	528	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	1	522	-	-
	Vvi18g1402	528	Pfam	ABC transporter	2	154	IPR003439	GO:0005524
	Vvi18g1402	528	CDD	ABCF_EF-3	107	199	-	-
	Vvi18g1402	528	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	280	505	IPR027417	-
	Vvi18g1402	528	FunFam	Putative ABC transporter ATP-binding component	1	249	-	-
	Vvi18g1402	528	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	2	217	IPR027417	-
	Vvi18g1402	528	MobiDBLite	consensus disorder prediction	253	278	-	-
	Vvi18g1402	528	Pfam	ABC transporter	318	453	IPR003439	GO:0005524
	Vvi18g1402	528	ProSitePatterns	ABC transporters family signature.	126	140	IPR017871	GO:0005524\|GO:0016887
	Vvi18g1402	528	Gene3D	-	265	528	IPR027417	-
	Vvi18g1402	528	FunFam	ABC transporter F family member 4	266	528	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1402	Vvi-Chr18	14382428	14384014	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g1402	300	505	Calmodulin-binding Proteins	AT2G36910	28.879	1.30e-14	75.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1402	K06184		-	vvi:100241016	984.556