Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1393 ATGGTTGTGATTATTCTGTTTCTTCTCTTCATCTCTGAATTCTCTACAACAACAGGACAACTAGGGAATTCAAGCATTACCCTGGGCTCTTCTCTCTCCCCCACTGGCCCCTCGAATTGGTCTTCACATTCTGGTCAGTTTGCCTTTGGATTCTACCAAAAAGGCAAAGGCTACGCTGTTGGCATCTGGTTTAACAGAATTTCACGAAGAACAGTCATATGGACTGCAAATCGGGATGCTGCACCACTCTCCCGAGATGTTCAACTGATTTTCACAAGTGACGGCAAGCTCATCTTGCAACAGAATCAAGGGGAAAGCATATCCATTGTTGACAGAGATCTTCCGCCTGCTTCCTCAGCTTCCATGCTCGATGATGGCAATTTTGTCCTAAAAAATTCAAGCTCCAGTGTCATATGGCAGAGTTTTGATACTCCAACAGACACCATTTTACCAGGGCAGCCTCTTTTGGCGGGGCAAAAGCTGGTCTCAAGCGTTTCTGAGACTAATCACTCGGCTGGAAAATTTCAACTCATTATGCAGAGCGATGGGAACTTGGTTCAATACCCGATAGATGTTGCAAAACCAGAAACTGCTTACTGGAATACTTCCACATTCACTGCTGGAGCGACTGTGAGTCTAAATCTTGATGTCAATGGCAAACTCTACCTGCGGAATGGAACTGGCTTTAATATCATGAATCTGTATGAAGGGAGTCCTTTCTCTACAGGTATCTACCGTTTGACCATAGATGCAGATGGTATATTGCGGTTGTATTCTAGCAGTTCGGATCAGAATGGTGATTGGACAGTGGAGTGGTCACCAACCACAAATAGGTGCGTCCCAAGAGGCTTGTGTGGTCTGAATGGGTACTGTCTTCTTACAAATCAGAACCCTCAATGTGTATGTCTTCCTGGTTTCTATCTCACGAAGCCGGGTCAGAATAACTCCGATTGCGAGAGGAATGTCAGCATGAGCAAGAATGGAGATATAGAGTATAATATCATTGCGTTGGAAGATATTACATGGGAAGACGACCCCTATTCTGTTCTCTCCATGACGAGACAGGCTTGCATAGAGAACTGCTTGAGTGACGGTAACTGCGAAGCCGCACTGTACAAAAACCAGCAGTGCAGAAAACAAACGCTTCCATTAAGATTTGGGAGTCAAGAAGGCGGAGTCACAACCTTATTCAAAGTAGGTAATTTTAGTTCGGTAGGCAAAGAAAGCAGGAAGGAGCTGCGAATAATTGTCATCCTAAGCACAAGCATTTCATTTTTCCTAGCAATCTCCGGTGTTGTTATTTACAGGTACGCATTCAAAAGGGTCTCGAATCAGGGAAATGATAGATGGGCGGAAGATGTCGCTCTACGACCATTCACGTACCATGAGCTTGAAAAAGCAACAAATGGGTTCAGGGATGAAGTGGGGAAAGGAGCTTTTGGAACAGTCTTCAAAGGGGCCATATCAAATGGCAAGACAGTCGCCATCAAGAGACTCGAGAAGATGATGGCAGAAGGCGAATGGGAATTCCAAAATGAGATGAAATCAATTGGGAGAACCCATCACAAGAATCTAGTTCGACTGCTGGGCTACTGCCATGACGGAAGTAATAGGCTTCTTGTCTACGAATACATGACAAATGGATCACTTGCAGATTTCCTCTTCAAGTCCGAAAGAAAGCCAATATGGGAGGAAAGAATTGAAATAGCCCTGAGTGTAGCCAGAGGCATCCTCTATCTGCACGAGGAGTGTGAAACCCAGATCATCCACTGCGACATAAAACCCGAAAACATTCTAATGGACGAGAAAGGGTGCGCAAAAATTGCAGATTTTGGGTTGGCAAAGCTGCTGATGCCCAACCAGACCAGGACCTACACAGGAATAAGAGGAACAAGGGGCTATGTTGCACCAGAATGGCACAGGAACTTGCCTATAACGGTAAAAGCAGATGTCTACAGCTTCGGGATCATGTTGATGGAAATCATTTGCTGTCGAAGGAGCTTAGACATGGATGTTTCGGAGAATGAAGTAGTACTTGTAGACTATGTGTACGACTGCTTCGAGGCAAGAGAGCTGGACAAGCTGGTGCGCGATGAAGAGGTGGATGGGATGAAACTTCAACGGATGGTGAAGGTGGGGCTTTGGTGCATTCAGGACGAGCCATCGGTTCGCCCTCTGATGAAGAAGGTGGTGCTTATGATGGAAGGGACAGTAGACATACCAGCTCCTCCTAGAGCTTCCTTTGCTAGTTCCATGTCTAGAGAGGCTCATAACTAA 2277 0.4563 MVVIILFLLFISEFSTTTGQLGNSSITLGSSLSPTGPSNWSSHSGQFAFGFYQKGKGYAVGIWFNRISRRTVIWTANRDAAPLSRDVQLIFTSDGKLILQQNQGESISIVDRDLPPASSASMLDDGNFVLKNSSSSVIWQSFDTPTDTILPGQPLLAGQKLVSSVSETNHSAGKFQLIMQSDGNLVQYPIDVAKPETAYWNTSTFTAGATVSLNLDVNGKLYLRNGTGFNIMNLYEGSPFSTGIYRLTIDADGILRLYSSSSDQNGDWTVEWSPTTNRCVPRGLCGLNGYCLLTNQNPQCVCLPGFYLTKPGQNNSDCERNVSMSKNGDIEYNIIALEDITWEDDPYSVLSMTRQACIENCLSDGNCEAALYKNQQCRKQTLPLRFGSQEGGVTTLFKVGNFSSVGKESRKELRIIVILSTSISFFLAISGVVIYRYAFKRVSNQGNDRWAEDVALRPFTYHELEKATNGFRDEVGKGAFGTVFKGAISNGKTVAIKRLEKMMAEGEWEFQNEMKSIGRTHHKNLVRLLGYCHDGSNRLLVYEYMTNGSLADFLFKSERKPIWEERIEIALSVARGILYLHEECETQIIHCDIKPENILMDEKGCAKIADFGLAKLLMPNQTRTYTGIRGTRGYVAPEWHRNLPITVKADVYSFGIMLMEIICCRRSLDMDVSENEVVLVDYVYDCFEARELDKLVRDEEVDGMKLQRMVKVGLWCIQDEPSVRPLMKKVVLMMEGTVDIPAPPRASFASSMSREAHN* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1393 758 SMART serkin_6 469 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1393 758 ProSiteProfiles Bulb-type lectin domain profile. 23 143 IPR001480 -
Vvi18g1393 758 PIRSF SRK 1 758 IPR024171 GO:0004674
Vvi18g1393 758 Gene3D - 20 144 IPR036426 -
Vvi18g1393 758 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 545 742 - -
Vvi18g1393 758 ProSiteProfiles EGF-like domain profile. 275 312 IPR000742 -
Vvi18g1393 758 FunFam Serine/threonine-protein kinase 145 270 - -
Vvi18g1393 758 ProSiteProfiles Protein kinase domain profile. 469 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1393 758 Pfam D-mannose binding lectin 71 156 IPR001480 -
Vvi18g1393 758 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 188 IPR036426 -
Vvi18g1393 758 Pfam S-locus glycoprotein domain 242 307 IPR000858 GO:0048544
Vvi18g1393 758 CDD EGF 279 310 - -
Vvi18g1393 758 SUPERFAMILY alpha-D-mannose-specific plant lectins 170 262 IPR036426 -
Vvi18g1393 758 FunFam Serine/threonine-protein kinase 146 287 - -
Vvi18g1393 758 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 20 143 - -
Vvi18g1393 758 Pfam Protein kinase domain 473 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1393 758 CDD B_lectin 40 145 IPR001480 -
Vvi18g1393 758 SUPERFAMILY Protein kinase-like (PK-like) 453 734 IPR011009 -
Vvi18g1393 758 Gene3D Transferase(Phosphotransferase) domain 1 545 741 - -
Vvi18g1393 758 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 36 744 - -
Vvi18g1393 758 CDD STKc_IRAK 475 736 - -
Vvi18g1393 758 Gene3D - 145 268 IPR036426 -
Vvi18g1393 758 ProSiteProfiles Bulb-type lectin domain profile. 146 270 IPR001480 -
Vvi18g1393 758 FunFam S-receptor-like serine/threonine-protein kinase 439 544 - -
Vvi18g1393 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Vvi18g1393 758 SMART blect_4 19 145 IPR001480 -
Vvi18g1393 758 ProSitePatterns Protein kinases ATP-binding region signature. 475 497 IPR017441 GO:0005524
Vvi18g1393 758 Gene3D Phosphorylase Kinase; domain 1 442 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1393 Vvi-Chr18 14207946 14210222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1393 418 744 Receptor kinase-like Gene Family AT4G18250 39.255 1.06e-67 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi18g1393 Pkinase 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1393 - - vvi:100247883 1530