Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1391 ATGGCAGATCTTGTTAGCTACGGTAATGCAGAGCGTGACGTCGAGCAGGCATTAATTGCTCTTAAGAAGGGTGCTCAACTGCTTAAATATGGTCGTAAAGGGAAGCCCAAATTTTGTCCTTTTAGACTTTCCAATGATGAATCATCTCTGATCTGGATTTCAAGTAGTGGTGAAAGAATTTTGAAGTTAGCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGATATCTACGTCCTGAGAAGGATTATTTGTCATTTTCTCTTATATACAACAACGGAAAGCGATCTCTTGATCTGATTTGCAAGGACAAAGTTGAGGCAGAAGTGTGGATTGCTGGGCTCAAAGCTTTGATTTCCTCTGGTCAAGGTGGGCGCTCCAAAATTGATGGATGGAGTGATGGAGGCCTCTACTTTGATGACAGCAAAGACTTGACTTCGAATAGTCCAAGTGACAGTTCAGTCAGTGCTACACGAGACATTAGCTCTCCAGAAGTTTCTGTCGGTTTCAACTCAAATACTTCTCCCAATAGCTATCGGCCTGAAAATTCTGTGCCTCCTGAAAGGTCACATGTAGCATTAGACCACACAAATATGCAAACAAAAGGATCTGGTTCAGATGCTTTTCGAGTAAGTGTTTCTAGTGCTCCCAGCACTTCCAGTCATGGTTCGGCCCCAGATGATTGTGATGCTTTAGGAGATGTATATATATGGGGTGAGGTTATATGCGATAATTTGGTCAAGGTTGGGGCTGATAAAAATGCTAATTATTTGACCACCAGGGCAGATTTGCTCCTTCCCAAGCCATTGGAGTCCAATGTTGTTTTGGATGTACATCATATAGCCTGTGGTGTCAGGCATGCTGCCCTAGTTACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCTGGAGGAAGGCTCGGCCATGGCGTTGGGAGAGATGTCATTCAACCTCGTCTAGTTGAATCTTTAGCTTTTACTAGTGTTGATTTTGTTGCCTGTGGAGAGTTCCACACTTGTGCTGTTACGATGGCTGGCGAACTCTTTACATGGGGAGATGGCACGCATAATGCTGGACTACTTGGTCATGGTACTGATGTTAGTCACTGGATACCCAAGAGAATTTCAGGTCCTCTTGAGGGACTTCAAGTTGCTTCAGTAACTTGTGGTCCATGGCACACAGCTTTAGTGACAACAACAAGACAGCTCTTTACATTTGGTGATGGGACATTTGGTGTATTGGGCCATGGTGACAAGGACAATGTTGCATATCCAAGAGAAGTAGAATCTTTATCTGGATTGAGAACAATTGCTGTTGCATGTGGGGTTTGGCACACTGCTGCTGTGGTTGAGGTTATTGTAACACAGTCTAGTGCAAGTGTTTCATCAGGAAAATTATTTACTTGGGGTGATGGAGATAAAAACCGTCTTGGACATGGAGACAAGGAACCCAGGCTTAAACCCACATGCGTGCCAGCACTTATTGAGTACAATTTTCAAAAAGTTGCTTGTGGGCATAGTTTAACTGTTGGGTTGACCACGTCAGGACAAGTTTGTACCATGGGAAGTACTGTCTATGGCCAACTTGGGAACCCCCAATCTGATGGAAAGCTACCTTGCTTTGTAGAAGATAAGCTTCTTGGGGAATGTGTTGAAGAGATTGCCTGTGGTGCGTACCATGTAGCAGTATTAACATCTAGGAATGAGGTTTATACATGGGGAAAGGGGGCTAATGGGAGGTTGGGCCATGGAGATATTGAAGATAGAAAAACACCAACTCTGGTTGAAACTTTGAAGGATAGACATGTCAAATATATTGCTTGTGGTTCAAACTACACAGCAGCTATATGTCTTCATAAATGGGTGTCTGGTGCTGAGCAGTCTCAATGCTCAACCTGTAGACAGGCGTTTGGGTTTACTCGAAAGAGGCACAATTGCTACAATTGTGGACTTGTGCACTGTCATTCATGCAGTTCCAGAAAAGCATTACGAGCTGCATTGGCTCCTAATCCAGGCAAGCCATACCGTGTGTGTGATTCCTGTTATACCAAACTGAACAAGGTGTTGGAAGCAGCAGCTAATAACAGGAGGACTACTGTTCCCCGCCTTTCAGGTGAAAACAAGGATAGGTTAGACAAGGCTGAAATAAGACTGTCCAAATCTGCAATGCCTTCTAATCTAGATTTGATTAAGCAGTTAGATAGCAAAGCTGCCAAACAAGGAAAGAAGGCTGATACTTTCTCCCTAGTTCGACCTTCTCAGGCACCTTTGTTACAGCTAAAAGACGTTGTTTTGTTCAGTGCTGTTGATCTCCGACGAACAGTTCCGAGACCAATTCTTACACCATCTGGAGTTAGTTCTAGGTCTGTGTCACCTTTTTCTAGGAAACCTAGTCCTCCACGCTCTGCTACACCTGTTCCTACAACTTCTGGACTTTCCTTCTCCAAAAGCATTGCTGATAGTTTGAAGAAAACGAATGAACTTTTAAATCAAGAAGTGCTTAAGTTACGTGGACAGGTTGAGAGTCTGAGAGAGCGATGTGAACTTCAAGAATTGGAGCTTCAGAAATCAGCAAAGAAAGTTCAAGAAGCTATGGTAGTGGCTACTGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAATCGCTTACTGCACAGCTCAAAGATATGGCTGAGAGACTGCCACCTGGGGTTTATGATGCTGAATGCATGAGGCCAGCTTACTTACTGAACGGTTTGGAGCCAAATGGCATTCACTATCCTGATTCAAATGGAGAGCGCCATTCAAGATCAGATTCAATTAATGGCTCTTGCTTGGCTTCTCCCACGGGAACCTACTCTGCTGTAATAAATGGAACTCAGGGTTCTACTCAATTGATGAGGGATCCACTTGGAACCAATGAAGCAAATCCATACCAACAGAATCTGGGACTTCTGACCTCCAATGTGAGGGATGAAAATCCAGATATTGGAATGCCAAATGGTGGTGGAGGGGTTCGGACAAGTAGCAGTAGTGTCTCTGAAGCTGTCGGTTGCAAGGATTCTGGGCCTCTCCAAGATGGTGAAGGTGGTACAAAATCTAGGAATTCAACTTTGAGTGACAACAGTCAAGTTGAAGCTGAGTGGATTGAACAGTATGAGCCCGGTGTATATATAACCCTTGTGGCCCTTCGTGATGGGACTAGAGATCTCAAAAGAGTGCGCTTCAGCCGAAGAAGATTTGGAGAACATCAAGCCGAGAATTGGTGGTCAGAAAATCGTGAAAAGGTGTATGAGAGATACAATGTTCGTGGGTCGGACAAGTCATCAGTTTCTGGCCAGGCTGCCCGTAGATCAGAGGGAGGCACCTCACCATCTTCCCGACTTTAG 3390 0.441 MADLVSYGNAERDVEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWISSSGERILKLASVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYFDDSKDLTSNSPSDSSVSATRDISSPEVSVGFNSNTSPNSYRPENSVPPERSHVALDHTNMQTKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICDNLVKVGADKNANYLTTRADLLLPKPLESNVVLDVHHIACGVRHAALVTRQGEIFTWGEESGGRLGHGVGRDVIQPRLVESLAFTSVDFVACGEFHTCAVTMAGELFTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALVTTTRQLFTFGDGTFGVLGHGDKDNVAYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIEYNFQKVACGHSLTVGLTTSGQVCTMGSTVYGQLGNPQSDGKLPCFVEDKLLGECVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDIEDRKTPTLVETLKDRHVKYIACGSNYTAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYTKLNKVLEAAANNRRTTVPRLSGENKDRLDKAEIRLSKSAMPSNLDLIKQLDSKAAKQGKKADTFSLVRPSQAPLLQLKDVVLFSAVDLRRTVPRPILTPSGVSSRSVSPFSRKPSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNQEVLKLRGQVESLRERCELQELELQKSAKKVQEAMVVATEESAKSKAAKEVIKSLTAQLKDMAERLPPGVYDAECMRPAYLLNGLEPNGIHYPDSNGERHSRSDSINGSCLASPTGTYSAVINGTQGSTQLMRDPLGTNEANPYQQNLGLLTSNVRDENPDIGMPNGGGGVRTSSSSVSEAVGCKDSGPLQDGEGGTKSRNSTLSDNSQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRGSDKSSVSGQAARRSEGGTSPSSRL* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1391 1129 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Vvi18g1391 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Vvi18g1391 1129 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Vvi18g1391 1129 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Vvi18g1391 1129 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Vvi18g1391 1129 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Vvi18g1391 1129 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Vvi18g1391 1129 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Vvi18g1391 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Vvi18g1391 1129 FunFam PH, RCC1 and FYVE domains-containing protein 1 459 630 - -
Vvi18g1391 1129 MobiDBLite consensus disorder prediction 994 1043 - -
Vvi18g1391 1129 MobiDBLite consensus disorder prediction 1105 1129 - -
Vvi18g1391 1129 MobiDBLite consensus disorder prediction 1029 1043 - -
Vvi18g1391 1129 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Vvi18g1391 1129 Gene3D - 13 129 IPR011993 -
Vvi18g1391 1129 MobiDBLite consensus disorder prediction 1102 1129 - -
Vvi18g1391 1129 ProSiteProfiles BRX domain profile. 1047 1102 IPR013591 -
Vvi18g1391 1129 Gene3D - 192 456 IPR009091 -
Vvi18g1391 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Vvi18g1391 1129 MobiDBLite consensus disorder prediction 147 230 - -
Vvi18g1391 1129 FunFam Putative E3 ubiquitin-protein ligase HERC1 12 132 - -
Vvi18g1391 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Vvi18g1391 1129 Coils Coil 824 865 - -
Vvi18g1391 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Vvi18g1391 1129 Gene3D - 457 630 IPR009091 -
Vvi18g1391 1129 MobiDBLite consensus disorder prediction 783 816 - -
Vvi18g1391 1129 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Vvi18g1391 1129 FunFam Putative E3 ubiquitin-protein ligase HERC1 631 699 - -
Vvi18g1391 1129 SUPERFAMILY FYVE/PHD zinc finger 625 697 IPR011011 -
Vvi18g1391 1129 MobiDBLite consensus disorder prediction 198 229 - -
Vvi18g1391 1129 Pfam Transcription factor regulating root and shoot growth via Pin3 1046 1101 IPR013591 -
Vvi18g1391 1129 CDD PH_PLC_plant-like 12 124 - -
Vvi18g1391 1129 SUPERFAMILY PH domain-like 13 123 - -
Vvi18g1391 1129 Coils Coil 880 900 - -
Vvi18g1391 1129 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Vvi18g1391 1129 FunFam PH, RCC1 and FYVE domains-containing protein 1 208 458 - -
Vvi18g1391 1129 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 895 - -
Vvi18g1391 1129 SMART fyve_4 623 692 IPR000306 GO:0046872
Vvi18g1391 1129 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Vvi18g1391 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Vvi18g1391 1129 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Vvi18g1391 1129 Pfam Transcription factor BRX N-terminal domain 875 910 IPR027988 -
Vvi18g1391 1129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 701 IPR013083 -
Vvi18g1391 1129 MobiDBLite consensus disorder prediction 147 188 - -
Vvi18g1391 1129 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872
Vvi18g1391 1129 MobiDBLite consensus disorder prediction 785 802 - -
Vvi18g1391 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Vvi18g1391 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 468 515 IPR000408 -
Vvi18g1391 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 407 454 IPR000408 -
Vvi18g1391 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Vvi18g1391 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Vvi18g1391 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 351 401 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1391 Vvi-Chr18 14160507 14171722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1391 1048 1104 Major Intrinsic Protein MIP AT1G31880 54.386 6.93e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1391 - - vvi:100246114 2226.82