Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1389 ATGGTGAGGAACGACCTCTTCATTAACATTCCGAGCTTTTTCAAGTGTCCCATTTCTTTGGACGTGATGAAGTCTCCGGTGAGCCTCTGCACCGGTGTCACATACGATCGCTCCAGCATACAGACATGGCTCGATAACGGCAACAACACCTGTCCTGCCACTATGCAGATTCTCCCCTCCAAGGACTTTGTCCCCAACCACACCCTCCAACGTCTCATCCAGGTCTGGGCCCAATCCTCCGCTGTCCCGTCGCCGGTGGTATCGTCGCGGCAGGTTGGGGCTTGGGTCGCCGACATTGAGAACCGCCGATTTGGTGCTCTACCGAAGATTTTGGATTACGCGTCTAGTTCTGATGAGAACAGGAGGTTTGTTGCGAGTTTGGATGGCTTTGTGCCGGTGGTGGCCGGCGTTCTGGGCAATGCCGGCGCTGGAATTGAGATTTTGGAATTGGTTGTTCGGATTTTGGATTTGGTTATGGTGGAAAAGGGAGTCAAAGAACAAATACAGGGATTGATCTTGAAAAGCAACCGCGATCACTTGTCGGCCATCCTTTTGATTCTAGAAAAAGGCAGTTCGGATTCAAAAATCGCATCGGCCAGGATTCTGGAGGCAATCGCAATTGACCCCGAATCAAAACGCTCAATCTCCGAAAGAGAAGGTCTACTGTCCGTACTGTTGCAGTTACTGAGTTCCCAGACCGATTCAAGTTCTCTCGACTCGGTCCTATCGTGCCTAATCGCCATAACCGTGACTCGCCAGACTAAAACTCAACTCGTCCGATCAGGACTCGTCCAAACCCTGGCCAAAACGCTCTCCACATCCAATTACCCGATTTCCACCACCGAGAAGTCCATAAAACTCCTCTTAACGATCTCCAACTGCCGAGACGGCCACCAAGCAATTTGCGAGGATCCGATCTGCGTGGCCGCGGTGGTGCAGAGAATGTCGATGAAACTATCGAGCTCTGCGGTGGAGGACGCGGTGACGGTACTGTGGAGCGTGTGCTATCTCAACCGAGACTCGAAGGCTCAGGAGGCGGTGGCGAAAAGCACTGGGTTGACTAAGATTCTGCTGTTGATGCAGACAAATTGTTCGGCTAATGTTCGGAGAATGTGCTGCGATTTAGTGAAGATTTTCAGAGTGAACTCCAAGTCGTGTTTGGCGAGCTATGATACCAAAACTACTCATATCACGCCTTATTAG 1203 0.5121 MVRNDLFINIPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQTWLDNGNNTCPATMQILPSKDFVPNHTLQRLIQVWAQSSAVPSPVVSSRQVGAWVADIENRRFGALPKILDYASSSDENRRFVASLDGFVPVVAGVLGNAGAGIEILELVVRILDLVMVEKGVKEQIQGLILKSNRDHLSAILLILEKGSSDSKIASARILEAIAIDPESKRSISEREGLLSVLLQLLSSQTDSSSLDSVLSCLIAITVTRQTKTQLVRSGLVQTLAKTLSTSNYPISTTEKSIKLLLTISNCRDGHQAICEDPICVAAVVQRMSMKLSSSAVEDAVTVLWSVCYLNRDSKAQEAVAKSTGLTKILLLMQTNCSANVRRMCCDLVKIFRVNSKSCLASYDTKTTHITPY* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1389 400 PANTHER WDSAM1 PROTEIN 9 388 IPR045185 GO:0061630
Vvi18g1389 400 SUPERFAMILY ARM repeat 115 380 IPR016024 -
Vvi18g1389 400 Gene3D - 105 386 IPR011989 -
Vvi18g1389 400 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Vvi18g1389 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
Vvi18g1389 400 SUPERFAMILY RING/U-box 5 78 - -
Vvi18g1389 400 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Vvi18g1389 400 CDD RING-Ubox_PUB 11 63 IPR045210 -
Vvi18g1389 400 Pfam Neurochondrin 201 331 IPR008709 -
Vvi18g1389 400 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Vvi18g1389 400 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1389 Vvi-Chr18 14139140 14140342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1389 1 400 U-box Gene Family AT5G64660 45.843 3.38e-116 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1389 - - vvi:100251262 716.842