Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1388 ATGTCGGAACATGAAGAGTACCGTTGTTTTATTGGCGGCCTTTCATGGTCAACATCTGATAGAAGTTTGAAAGAAGCATTTGAAAAATTTGGCCATCTCGTTGAGGCGAAGGTTGTTGTGGACAAGTTTTCTGGTCGCTCTCGTGGATTTGGCTTTGTTTCTTTTGATGACAAGCAAGCAATGGAAGATGCCATTAAGGAAATGCATGGCATGGATCTAGATGGACGATCTATCACTGTGGATAAAGCCCAGCCAAACCAAGGCTCTGGAAGAGATCGGGATGGGGATAGGGACCGGGACCGTGGTCGTGATCGTTACAATGATCGGGATCGTAACCGTGATTATGGAGGTGGACGGGGATCTAACGGTGGGGAGTGTTTTAAATGTGGAAAACCTGGACATTTTGCTAGGGAGTGTCCATCAAGTGAAGGTGCTAGAGGTGGTAGATATGGTGGAAGGGATGATAAATATGGTGGTGGGGGTGGCGGTGGCAGTGGCGGCCGTTATGGTCCTGATCGTAATGGGGATCGCTATGGTGGACGCAGCAAGGATGCTGGTAGTCGTGGAGGGTCTGGGAATGATAGATACAGCCGTGACCGTTCTGGTCCATATGAGCGCCGTTGA 624 0.4936 MSEHEEYRCFIGGLSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIKEMHGMDLDGRSITVDKAQPNQGSGRDRDGDRDRDRGRDRYNDRDRNRDYGGGRGSNGGECFKCGKPGHFARECPSSEGARGGRYGGRDDKYGGGGGGGSGGRYGPDRNGDRYGGRSKDAGSRGGSGNDRYSRDRSGPYERR* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1388 207 ProSiteProfiles Zinc finger CCHC-type profile. 126 141 IPR001878 GO:0003676|GO:0008270
Vvi18g1388 207 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 207 - -
Vvi18g1388 207 SUPERFAMILY RNA-binding domain, RBD 5 116 IPR035979 GO:0003676
Vvi18g1388 207 CDD RRM2_NsCP33_like 8 83 - -
Vvi18g1388 207 FunFam Glycine-rich RNA-binding protein RZ1A 1 121 - -
Vvi18g1388 207 Pfam Zinc knuckle 125 141 IPR001878 GO:0003676|GO:0008270
Vvi18g1388 207 SUPERFAMILY Retrovirus zinc finger-like domains 106 146 IPR036875 GO:0003676|GO:0008270
Vvi18g1388 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vvi18g1388 207 MobiDBLite consensus disorder prediction 87 116 - -
Vvi18g1388 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 78 IPR000504 GO:0003723
Vvi18g1388 207 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Vvi18g1388 207 MobiDBLite consensus disorder prediction 193 207 - -
Vvi18g1388 207 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vvi18g1388 207 Gene3D - 1 103 IPR012677 -
Vvi18g1388 207 MobiDBLite consensus disorder prediction 71 207 - -
Vvi18g1388 207 Gene3D - 117 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1388 Vvi-Chr18 14133002 14134389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1388 9 84 Eukaryotic Initiation Factors Gene Family AT1G22760 31.579 1.00e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1388 - - vvi:100256416 318.931