Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1382 ATGGGGTTCAACAAGAAGAGAATTATTGGTGAAGGGGCATCTTCAACTGTATATCAAGGGTTCCTTCCCTCTGTGGGAGCAGTAGCAGTTAAGAGGTTCACCCAGACTAATCGGATTGATTATTGCAGCGATCCATTTACAAATGAGTTTGTAACAGTTGGAGATTGCTTGCGACACGCAAACTTAGTGCAGCTCATAGGATGGTGCTGTGAGGGAAATGAATTTCTCCTGATCTATGAGTACTTGCCCAATGGAAGCCTTGACAAAGTCCTGCACAAAAACATCAAGTCAGGAAGCTCCCTCACCTGGGAGCAGAGATTGAATATAGTTCTTGGGGTTGCCTCTGCTCTTACCTATCTCCATGAAGAATGTGAGAGGCAGATCATTCACAGAGATGTGAAGGCTTCCAACATAATGCTGGATTCAGAGTTCAATGCCAAGCTTGGAGACTTTGGCTTGGCAGAAATTTATGAGCACAGCTCCATCACAAGAGAAGCCACCATACCAGCTGGAACAATGGGATACCTTGCTCCTGAGTATGTCTGCTATGGTGTTCCCACAGAGAAAACAGATGTCTACAGCTTTGGTGTGGTCATGCTAGAGCTTGCAACTGGGAGAAAGCCTGTTGATGATGACAGATCCGTGCTTCTTGATTGGGTATGGGACCTGCGAGAAAAGGGAACACTGATGTTGGCCGCTGATTTTAGGTTGATGGGAAGGTTTAATAGGGTGGAGATGGAGAGAATGCTCATGGTGGGACTTTCTTGTGCGCACCCAAACCACAAGAAGAGACCAACAGTGAAGAAAGCAGCAAGGATTCTTAGGGGTGAAGCACCTCTCCCCACTCTGCCAGCAAGGAAGCCAACCCCAAGACCTCAACATTCCTTGCCTGAGGCTTCCCAACGGATAATGGATCTTGGTGGAGATGATGAGAACCCTAGCTTGGATGATGCACCATGGATGACTCCAAGGAGCCATTTTGGATAG 987 0.4721 MGFNKKRIIGEGASSTVYQGFLPSVGAVAVKRFTQTNRIDYCSDPFTNEFVTVGDCLRHANLVQLIGWCCEGNEFLLIYEYLPNGSLDKVLHKNIKSGSSLTWEQRLNIVLGVASALTYLHEECERQIIHRDVKASNIMLDSEFNAKLGDFGLAEIYEHSSITREATIPAGTMGYLAPEYVCYGVPTEKTDVYSFGVVMLELATGRKPVDDDRSVLLDWVWDLREKGTLMLAADFRLMGRFNRVEMERMLMVGLSCAHPNHKKRPTVKKAARILRGEAPLPTLPARKPTPRPQHSLPEASQRIMDLGGDDENPSLDDAPWMTPRSHFG* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1382 328 ProSiteProfiles Protein kinase domain profile. 3 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1382 328 CDD STKc_IRAK 9 274 - -
Vvi18g1382 328 PANTHER - 2 284 - -
Vvi18g1382 328 MobiDBLite consensus disorder prediction 277 328 - -
Vvi18g1382 328 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1382 328 Gene3D Transferase(Phosphotransferase) domain 1 82 279 - -
Vvi18g1382 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vvi18g1382 328 SUPERFAMILY Protein kinase-like (PK-like) 3 296 IPR011009 -
Vvi18g1382 328 Pfam Protein kinase domain 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1382 328 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Vvi18g1382 328 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vvi18g1382 328 FunFam L-type lectin-domain containing receptor kinase VIII.1 82 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1382 Vvi-Chr18 14071663 14072649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1382 2 327 Receptor kinase-like Gene Family AT5G42120 61.078 6.24e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi18g1382 Pkinase 6.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1382 - - vvi:100242826 674.47