Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1378 ATGGAGCACTCAGAGAATGTTTCTGGGATGTATGAAGCTGTATCCATGCCAAGGACTGGAAAGGATTCCATTTTCATACCAGGTAGAAAATCCAGCAGCAGAAGCTCAAGTGTGGTTCAACCTCAAGATGACAAAGATGAGGCTGGAATTAGGATACAAAAGAAGCGAAGCTTTAACAGGGAAAAGGAATTAGCAAGTGGAAAAGCTGTTCGCAAAACAAAGTCACTAAGTTCCCAATTCTTAGTTAATATAGATGAACTTTTTAATAATGTTGCTGGGAGCTTTGATGAAAAAGGTTCCATTCCTAGCAGGGCATCTAGCAATGGCTTAGGCTTCTCCACCCCACTAGCTGGATCCGTCTTGCCCTTGGATGACATTTCAGACGCCTCAAGACTGCAGATTCCCCGTCAGAAAGATAGTGCAACAAGGCAGTCTCGGTCAGCTCATGAGAAGGATCAGGATTCTTGTGGGTGGAGGAAAACAAACAGCAAACCTACCTTACCAATATATCTCAAGTTTGAAGATGTCAAATACAAAGTGGTAACAAAGGGAGGAAAGAGCTCTGATGAGAAGCATATATTACATGGCATTACTGGTTCAGTAGATCCAGGGGAGGTCTTAGCACTTATGGGGCCATCTGGTGGTGGTAAAACAACATTACTCAATCTCCTCAGTGGAAAGGTCAAAACCAACAGTGGTAGGATCACTTATAATGATCAACCATATGCTAAAACACTCAAGCATAGCAGGATTGGATTCGTGCTGCAAGATGACATTGTGTTTCCCCACCTTACAGTCAAAGAAACTCTAACATATGCAGCTTTGCTTCGTCTTCCCAATACATTAACCAGACAGCAGAAAAAGGAAAGAGTCATGGATATTATCAGTGAGCTAGATCTTGAAAGGTGCCAAAACACAATAATTGGTGGTGCATTAGTTAGAGGGATTTCTGGTGGTGAGAGAAAAAGAGTCTGTATCGGCAATGAAATCCTGCTCAACCCATCACTTCTCTTCCTTGATGAACCAACATCTGGTCTGGATTCAACAACTGCACTTCGGATTCTTCAGATGCTACAGAACACTGCAGAGGCTGGCAAGACAGTGGTGACTACAATTCATCAACCTTCAAGTAGACTATTCAGTATGTTTGACAAGTTAGTCCTCTTGGGTAAAGGAAACTCCTTGTACTTTGGAAAAGCCTCAGAAGCAATGCTATATTTCTCCTCAATAGGTTGTTCTCCACTTGAAGCCATGAACCCAGCAGAGTTTCTCATTGATCTTGCCAATGGAAACATAAGTAACAAATCAGTTCCATCAGAGTTGGAGGATAAGTACTCCCCCGGAAGACAAAATTTTGAAAATGAAGAGGGGAAGCCTTCTCCAGGAGAAGTCCATGAGTATCTTGTAGGGGCCTATGAAGAAAGAGTTGCAAACCTGGAGAAAATGAAGCTTCTAAGCCCAGTGCTGATAGACAGTGTGTCTGAGATGCAAAGGAGAGAAAATTCACCGGAATGGGGAGCAAATTGGTGGCAACAGTTTTCAATTCTTTTCAGAAGAGGCCTTAAGGAGAGACGCCATGAATATTTAAATGGTCTTCGTATAACCCAAGTTATATCCACTGCTGTAATCTTAGGATTGCTCTGGTGGCATTCTGATGCTTCATCTCCTAAGAAACTTCAAGATCAAGCAAGGTTGCTGTTCTTCATTTCAGTCTTTTGGGGTTTCCTCCCTCTATTCACTGCTATTTTCACATTCCCTCAAGAACGAGCTATGCTGGTTAAAGAGAGATCTGTGGATATGTATAGACTCAGTGCATACTTTGTAGCAAGAAACACAAGTGATCTTCCTTTGGATCTCATCCTGCCCATATTGTTTATGTTGATAGTATATTTCATGGCAGGCTTAAAGCCTAGCTTTGCGGCATTTTCTCTAACTATGCTTACAGTTTTCCTCAGCATTTTGGCTTCCCAGGGTCTAGGAATGACCATAGGTGCAGCACTGATGGATGTGAAGAAAGCAACAACACTGGCTTCTATTACTCTGATGACCTTCATGTTATCTGGCGGATTTTTTATCCAGGAGTTTCCATCTTTCATATCGTGGGCACGACACATCTCTTTCAACTACCATACATACAGGCTACTCCTGAAGATTCAGTATAGTTGCTCAAATTCAAATTATGAAGAAGGTCCCTGCAACTCTCCCTTCATCAGAGGACTAAAACTTAATAGGTCTGGAATGGAACTGGGAGCCATGGTAGCAATGTGTATTGGATATCGATTACTGGCCTACATATTCCTCAGGAGAATGAAACTCAGGACACTAACATAG 2331 0.4221 MEHSENVSGMYEAVSMPRTGKDSIFIPGRKSSSRSSSVVQPQDDKDEAGIRIQKKRSFNREKELASGKAVRKTKSLSSQFLVNIDELFNNVAGSFDEKGSIPSRASSNGLGFSTPLAGSVLPLDDISDASRLQIPRQKDSATRQSRSAHEKDQDSCGWRKTNSKPTLPIYLKFEDVKYKVVTKGGKSSDEKHILHGITGSVDPGEVLALMGPSGGGKTTLLNLLSGKVKTNSGRITYNDQPYAKTLKHSRIGFVLQDDIVFPHLTVKETLTYAALLRLPNTLTRQQKKERVMDIISELDLERCQNTIIGGALVRGISGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTTALRILQMLQNTAEAGKTVVTTIHQPSSRLFSMFDKLVLLGKGNSLYFGKASEAMLYFSSIGCSPLEAMNPAEFLIDLANGNISNKSVPSELEDKYSPGRQNFENEEGKPSPGEVHEYLVGAYEERVANLEKMKLLSPVLIDSVSEMQRRENSPEWGANWWQQFSILFRRGLKERRHEYLNGLRITQVISTAVILGLLWWHSDASSPKKLQDQARLLFFISVFWGFLPLFTAIFTFPQERAMLVKERSVDMYRLSAYFVARNTSDLPLDLILPILFMLIVYFMAGLKPSFAAFSLTMLTVFLSILASQGLGMTIGAALMDVKKATTLASITLMTFMLSGGFFIQEFPSFISWARHISFNYHTYRLLLKIQYSCSNSNYEEGPCNSPFIRGLKLNRSGMELGAMVAMCIGYRLLAYIFLRRMKLRTLT* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1378 776 MobiDBLite consensus disorder prediction 134 160 - -
Vvi18g1378 776 MobiDBLite consensus disorder prediction 436 463 - -
Vvi18g1378 776 MobiDBLite consensus disorder prediction 142 158 - -
Vvi18g1378 776 FunFam ABC transporter G family member 22 181 410 - -
Vvi18g1378 776 CDD ABCG_EPDR 168 398 - -
Vvi18g1378 776 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 171 416 IPR003439 GO:0005524
Vvi18g1378 776 Pfam ABC-2 type transporter 511 720 IPR013525 GO:0016020|GO:0140359
Vvi18g1378 776 Gene3D - 170 409 IPR027417 -
Vvi18g1378 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 404 IPR027417 -
Vvi18g1378 776 SMART AAA_5 203 393 IPR003593 GO:0016887
Vvi18g1378 776 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 144 763 - -
Vvi18g1378 776 MobiDBLite consensus disorder prediction 1 50 - -
Vvi18g1378 776 MobiDBLite consensus disorder prediction 446 462 - -
Vvi18g1378 776 Pfam ABC transporter 194 344 IPR003439 GO:0005524
Vvi18g1378 776 ProSitePatterns ABC transporters family signature. 316 330 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1378 Vvi-Chr18 14023149 14027197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1378 193 377 Calmodulin-binding Proteins AT2G36910 32.124 1.20e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1378 K05681 - vvi:100256491 1507.66