Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1375 ATGAAGAAGCTTCACCATCTCTCACTGTTCATCCTCCATTTCCAAATCATTCTATTCTCCAGCATGAACACGGTGGAAGCTCTAGATGCTAACCCCAACAAACAGGCGCTTTTGTCTTTCAAATCCACAGTCTCGGACCCTCAAAATGCTCTCTCAGATTGGAACTCCAGCTCATCTCACTGCACTTGGTTTGGTGTCACTTGCACCAGTAACAGAACCAGCGTCCAATCTCTCCACCTGCCTGGAGTTGGCCTCTCAGGTATTATACCTCCACACCTCTTCAACCTCACATCTCTTCAAGTTTTAGATCTTTCTAACAATTCCTTCCAAGGCCAGATCCCTGCTGGGCTCTCTCATTGTTATAATCTCAGAGAGATCAATTTACGGAGGAACCAACTTGTGGGTCCCCTTCCATCTCAATTAGGCCATCTGTCTAGACTGAAATTTATGGATGTGTATGCCAACAATCTTAGTGGTGCAATCCCTCCAACTTTTGGAAATCTCACCTCTCTTACCCATCTAAACCTAGGAAGAAACAATTTTCGTGACGAAATTCCAAAGGAGTTGGGTAATCTCCATAATCTAGTTCTTCTTCGCCTTTCAGAGAACCAATTATCTGGCCAGATACCTAATTCACTTTATAACATTTCTTCTTTATCTTTTCTGTCACTAACCCAAAATCATCTTGTTGGAAAACTACCAACTGATATGGGTCTTGCTCTCCCTAATCTCAGGCAACTCTTGTTGGCTGAGAACAGCTTTGAAGGATTGATACCCAGTTCTTTAAACAATGCTTCAGAAATTCAGTTTCTTGACCTCTCTTCAAATTTATTTCAAGGGTCAATTCCTTTCCTTGGGAACATGAATAAACTTATCATGCTAAATCTAGGAGTGAATAATCTCTCTTCCACCACAGAGCTGAATCTTCAGGTATTCGATTCCCTCACAAACTGTACCCTATTGGAAAGCCTCATTCTGAATTCCAACAAACTGGCCGGCAACCTTCCAAGTTCAGTTGCAAATCTGTCAGCCCATCTGCAACATTTTTGCATTGAAAGCAATCTCTTTACTGGGAAATTACCCAGAGGAATTGATAAGTTTCAGAGCCTCATATCCTTGACTTTGCAGCAAAATCTTTTCACAGGTGAGCTACCAAATTCCATAGGAAGACTCAACAAACTGCAGAGAATTTTTGTCCACGAAAACATGTTCTCAGGAGAAATTCCTAATGTCTTTGGGAATCTTACACAATTGTATATGCTCACACTGGGATACAATCAGTTTTCTGGTAGAATCCCTGTGAGTATTGGTGAATGCCAGCAATTAAACACCCTGGGTCTATCTTGGAACAGGCTAAATGGCAGCATACCAATAGAGATTTTCTCACTCTCTGGTCTCAGTAAACTATGGTTAGAAAAAAATTCTCTGCAGGGTTCTCTCCCCATTGAAGTGGGTAGCCTGAAGCAGCTCTCCTTATTGAATGTTTCTGACAACCAGTTGTCCGGAAACATCACAGAAACAATTGGCAACTGCTTAAGTTTGCAAACTCTTAGCATGGCAAGAAATGGAATAATGGGCTCAATACCGGATAAAGTGGGCAAACTAGTGGCATTGAAGAGCTTGGATCTTTCTTCCAACAATCTCTCTGGCCCAATCCCCGAATATTTGGGGAGTCTTAAGGATTTGCAAAGCTTAAATTTGTCTTTCAATGACTTGGAAGGAAAAGTTCCGAGGAGTGGGGTGTTCATGAATCTTAGCTGGGATTCTCTCCAAGGAAATGATATGCTTTGTGGAAGTGACCAAGAGGTTGCAGGGAAGCTGAGACTCCATACATGTAGTACAAAGAAGAAGCAAAGCAAGCATTTTGGACTCACCATCAGCATTGCAGTTGTGGGCTTCACTTTGTTAATGTGTGTAATCTTCTATTTCATTTGGGCATTGGTCTCCCGAAGAAGGAAAAAGAAGGGGACAAAGGAAAGCTTCTTTTCCCGTCCTTTCAAGGGGTTTCCTGAAAAGATGTCTTATTTTGAAATCCGGCTAGCAACAAACAGTTTTGCAGCCGAAAATTTGATAGGAGAAGGAGGCTTCGGGTCTGTTTATAAAGGAGTTCTCAGAACTGGTGAAGATGGAGCCGGCACCACCCTTGCTATAAAGGTCCTTGACCTGCAGCAGAGCAAAGCTTCTCAGAGTTTCTATGCAGAATGTGAAGCTCTGAGGAATATTCGGCATCGGAACCTTGTGAAGGTTATCACTTCATGCTCTAGCATTGATCACACAGGAGGTGAATTCAAGGCTTTGGTCATGGAGTTCATGTCTAACGGTAGTTTATACAATTGGTTGAACCCGGAAGACTCCCAATCTAGGTCGAGTCTGACCTTAATCCAGAGACTGAATATCGCCATAGACGTGGCTTCTGCCATGGATTACCTGCACCATGACTGTGACCCACCTATAGTCCATTGTGATTTGAAACCTGGAAATGTGCTTTTGGATGATGATATGGCTGCTCATGTGGGAGACTTTGGATTGGCAAGGTTTCTTTCTCAAAATCCATCACAGAGTGAAAGCAGCACAATAGGACTAAAGGGCTCAATTGGCTACATTGCTCCAGAGTATGGTTTGGGTGGAAAAGCTTCAACAAATGGAGATGTCTACAGTTTTGGAATTCTGCTGCTTGAGATATTCACAGCAAGGAAGCCCACTGATGAGATCTTTCAGCAAGGTCTAAACCAGAAAAAATATGCATTGGCAGTGCAAGCAAATCAAGTTTCAGAAATTGTTGATCCTGGGATTTTCAGTCATACTAATTCTTCGGAGCTTAGCCCCTTTATCAGTTCCTCTGCATGCAGCAACCACAGCAGCACAAGCAGTACCATCAGCGTCGGGCGAAATAAAAATGAAGAGTGCTTGGCAGCCATAATAAGAGTTGGTTTGTGTTGTGCCGATCATTCCCCTAGTGACCGTTTAACTATAAGAGAAACTTTAACCAAGTTGCAAGAGATAAGAAAATTTCTTCTGGAGCTGTGA 3027 0.4258 MKKLHHLSLFILHFQIILFSSMNTVEALDANPNKQALLSFKSTVSDPQNALSDWNSSSSHCTWFGVTCTSNRTSVQSLHLPGVGLSGIIPPHLFNLTSLQVLDLSNNSFQGQIPAGLSHCYNLREINLRRNQLVGPLPSQLGHLSRLKFMDVYANNLSGAIPPTFGNLTSLTHLNLGRNNFRDEIPKELGNLHNLVLLRLSENQLSGQIPNSLYNISSLSFLSLTQNHLVGKLPTDMGLALPNLRQLLLAENSFEGLIPSSLNNASEIQFLDLSSNLFQGSIPFLGNMNKLIMLNLGVNNLSSTTELNLQVFDSLTNCTLLESLILNSNKLAGNLPSSVANLSAHLQHFCIESNLFTGKLPRGIDKFQSLISLTLQQNLFTGELPNSIGRLNKLQRIFVHENMFSGEIPNVFGNLTQLYMLTLGYNQFSGRIPVSIGECQQLNTLGLSWNRLNGSIPIEIFSLSGLSKLWLEKNSLQGSLPIEVGSLKQLSLLNVSDNQLSGNITETIGNCLSLQTLSMARNGIMGSIPDKVGKLVALKSLDLSSNNLSGPIPEYLGSLKDLQSLNLSFNDLEGKVPRSGVFMNLSWDSLQGNDMLCGSDQEVAGKLRLHTCSTKKKQSKHFGLTISIAVVGFTLLMCVIFYFIWALVSRRRKKKGTKESFFSRPFKGFPEKMSYFEIRLATNSFAAENLIGEGGFGSVYKGVLRTGEDGAGTTLAIKVLDLQQSKASQSFYAECEALRNIRHRNLVKVITSCSSIDHTGGEFKALVMEFMSNGSLYNWLNPEDSQSRSSLTLIQRLNIAIDVASAMDYLHHDCDPPIVHCDLKPGNVLLDDDMAAHVGDFGLARFLSQNPSQSESSTIGLKGSIGYIAPEYGLGGKASTNGDVYSFGILLLEIFTARKPTDEIFQQGLNQKKYALAVQANQVSEIVDPGIFSHTNSSELSPFISSSACSNHSSTSSTISVGRNKNEECLAAIIRVGLCCADHSPSDRLTIRETLTKLQEIRKFLLEL* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1375 1008 ProSitePatterns Protein kinases ATP-binding region signature. 691 718 IPR017441 GO:0005524
Vvi18g1375 1008 Gene3D Ribonuclease Inhibitor 240 604 IPR032675 -
Vvi18g1375 1008 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Vvi18g1375 1008 FunFam LRR receptor-like serine/threonine-protein kinase EFR 657 770 - -
Vvi18g1375 1008 ProSiteProfiles Protein kinase domain profile. 685 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1375 1008 CDD STKc_IRAK 691 1001 - -
Vvi18g1375 1008 SMART LRR_typ_2 535 559 IPR003591 -
Vvi18g1375 1008 SMART LRR_typ_2 487 511 IPR003591 -
Vvi18g1375 1008 SMART LRR_typ_2 96 120 IPR003591 -
Vvi18g1375 1008 SMART LRR_typ_2 192 216 IPR003591 -
Vvi18g1375 1008 SMART LRR_typ_2 415 439 IPR003591 -
Vvi18g1375 1008 SMART LRR_typ_2 168 191 IPR003591 -
Vvi18g1375 1008 SMART LRR_typ_2 241 264 IPR003591 -
Vvi18g1375 1008 PANTHER OS04G0122200 PROTEIN 190 1002 - -
Vvi18g1375 1008 SMART serkin_6 685 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1375 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Vvi18g1375 1008 FunFam Predicted protein 313 607 - -
Vvi18g1375 1008 Gene3D Ribonuclease Inhibitor 30 183 IPR032675 -
Vvi18g1375 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 771 1007 - -
Vvi18g1375 1008 Pfam Protein tyrosine and serine/threonine kinase 688 907 IPR001245 GO:0004672|GO:0006468
Vvi18g1375 1008 SUPERFAMILY L domain-like 32 303 - -
Vvi18g1375 1008 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 66 312 - -
Vvi18g1375 1008 Gene3D Ribonuclease Inhibitor 184 239 IPR032675 -
Vvi18g1375 1008 Gene3D Transferase(Phosphotransferase) domain 1 771 1005 - -
Vvi18g1375 1008 SUPERFAMILY Protein kinase-like (PK-like) 660 998 IPR011009 -
Vvi18g1375 1008 Pfam Leucine rich repeat 74 133 IPR001611 GO:0005515
Vvi18g1375 1008 Pfam Leucine rich repeat 513 572 IPR001611 GO:0005515
Vvi18g1375 1008 Gene3D Phosphorylase Kinase; domain 1 667 770 - -
Vvi18g1375 1008 SUPERFAMILY L domain-like 345 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1375 Vvi-Chr18 13997480 14000593 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1375 33 1003 Receptor kinase-like Gene Family AT3G47570 42.163 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi18g1375 PK_Tyr_Ser-Thr 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1375 - - vvi:100854714 1947.94