Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1370 ATGTCTACCTTCAGCGGCGATGAGATGGCTCCATTCTTCGGTTTCCTCGACGCTGCTACCACCCTTGTTTTCTCCTATATGGGAGTGTCATATGGAACCACAAAGAACGGGGTTGGTGTGGCCTCCATGGGTGTGATGAGATTGGAACTTGTTATGAAGTCGATCGTTCCAGCTGTTATGGCAAGAGTGTTGGGAATTTATGGTTTGATTATTGTTGTTATCATTAGTACTGATGGTGCTCACAAAATTCCTCATATTTTCCTTGGAGATTCTCTCTTATGGGGAGGTAATGGTGGTTGA 300 0.4467 MSTFSGDEMAPFFGFLDAATTLVFSYMGVSYGTTKNGVGVASMGVMRLELVMKSIVPAVMARVLGIYGLIIVVIISTDGAHKIPHIFLGDSLLWGGNGG* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1370 99 Gene3D - 10 96 IPR035921 -
Vvi18g1370 99 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi18g1370 99 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi18g1370 99 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 2 87 - -
Vvi18g1370 99 NCBIfam V-type ATPase subunit C 12 78 IPR011555 GO:0033179|GO:0046961|GO:1902600
Vvi18g1370 99 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 77 - -
Vvi18g1370 99 Pfam ATP synthase subunit C 18 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1370 Vvi-Chr18 13930846 13931145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1370 1 90 Primary Pumps ATPases(2) AT2G16510 74.444 1.20e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1370 K02155 - ath:AT4G38920 114.775