Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1365 ATGTCAAGCAATGCAATCACTATTTTTCTCTTGTTCCTCAACATCTCTCTGTTCCCAGCCATCTGTGCACTGAACCAGGAAGGCCTCTCTCTGCTTTCATGGCTTTCAACCTTCAATACTTCTTCCTCTGCCGCTTTCTTCTCTTCATGGAATCCAAACCACCAGAATCCATGCAAATGGGACTATATCAAATGTTCCAGTGCTGGTTTTGTTTCAGAAATTACAATTAGCTCCATTGATTTTCATACTACTTTTCCCACTCAGATCCTCTCCTTCAACTTTCTCACCACTCTTGTCATCTCAGATGGGAATCTCACCGGAGAAATTCCACCTTCCATTGGGAACTTGTCATCACTGATTGTCCTGGACCTTAGTTTCAATGCTTTGACAGGAAAAATTCCGCCTGCAATCGGAAAATTATCTGAACTGCAGCTATTATTGCTGAATTCAAATTCCATTGTCGGAGAAATTCCAAGGGAAATTGGAAACTGTTCCAAGCTTCGACAGCTTGAACTGTTTGATAATCAGCTATCCGGAAAAGTCCCTGCAGAAGTAGGCCAACTGTGGGGTCTGGCAGTTTTTCGTGCTGGTGGAAACTCAGGAATTTATGGAGAAATCCCAATGCAGATGTCAAACTGCCAAGAACTAGTTCTCTTGGGTCTCGCAGATACTGGGATTTCAGGGCAGATTCCATATAGTTTTGGACAGCTGAAGAAGCTCAAGACTCTTTCTATATACACAGCAAATCTCACGGGTGAGATTCCACCAGAAATTGGGAATTGCTCATCCTTGGAGAATTTGTTTGTGTATCAAAACCAAATCTCGGGAGAGATACCAGCTGAACTAGGCTTGCTGAAAAATCTTAGGAGGGTGTTATTGTGGCAGAACAATCTAGCTGGGAGCATTCCGGCAACCCTTGGGAATTGTTTGGGTTTGACAGTAATTGATTTCTCACTGAATTCTCTGACAGGTGAGATTCCAATGTCTTTTGCAAATTTAGGTGCATTAGAGGAGCTTCTTCTGTCTGATAACAACATTTCTGGCAAAATACCACCATTTATCGGCAGCTTTTCCAGGATGAAGCAGCTTGAATTGGATAACAACCTGCTTTCTGGGGAGATTCCAGCCACCATTGGACAACTAAAGGAGCTCTCTCTGTTCTTTGCTTGGCAGAATCAGCTCAGTGGAAGCATACCGATTGAGCTGGCCAATTGCGAGAAACTTCAAGACTTGGATCTTTCACACAATTTCCTTTCTGGGTCAGTTCCCAATTCTCTCTTCAACCTCAAGAATTTAACCAAGTTGTTGCTGATATCAAACGGATTATCAGGTGAAATTCCACCTGATATTGGCAACTGCACCAGTTTGATCCGTTTACGCCTGGGATCAAACAAGTTCACTGGTCAAATCCCACCAGAAATTGGCCTCTTAAGCAATTTGAGTTTCCTTGAATTGTCAGAAAATCAATTCACTGGAGAAATCCCCCCAGATATTGGCAACTGCACTCAGCTTGAAATGGTCGATTTGCATGGAAATCGGCTCCAAGGCACCATCCCCACTTCTTTCCAGTTTCTTGTCAGTCTCAATGTCTTAGACCTTTCCATGAACAGGATGTCTGGTTCTGTTCCAGAGAACTTGGGCAGGCTTACCTCCTTGAACAAACTTATATTGAATGAAAACTACATTACTGGGCCGATTCCAAATTCACTTGGCCTCTGCAAGGACTTGCAGTTCTTGGATATGAGCAGCAACAGAATCACTGGTTCTATCCCAGAGGAGATTGGTCGCTTACAAGGACTAGACATCCTATTGAACTTGAGTAGGAATTCTCTTTCAGGACCCGTTCCAGAAAGCTTTTCCAATCTTTCCAACCTCGCAAACTTGGACCTCTCTCACAACATGTTGACAGGAAGCCTGAGAGTCTTGGGTAATCTTGACAACCTTGTTTCTCTGAATGTCTCATACAATAATTTCTCAGGTTCTATTCCAGATACCAAATTCTTCCAAGATCTCCCAGCCACTGTTTTCTCTGGCAATCAAAAGCTCTGCGTTAACAAGAATGGTTGCCACTCAAGTGGAAGCCTCGATGGCAGGATATCTAATAGAAATCTTATCATCTGTGTTGTTCTCGGGGTAACTCTGACAATAATGATCATGTGTGCTGTGGTAATATTTCTTCTCCGAACTCATGGAGCTGAATTTGGGAGCAGTAGCGATGAAGAAAACAGCTTAGAGTGGGATTTCACGCCATTCCAAAAGCTGAACTTCTCCGTAAATGATATCGTGAATAAATTGTCAGATTCCAACGTAGTTGGAAAGGGCTGTTCAGGCATGGTCTATCGTGTTGAGACTCCAATGAAACAGGTGATAGCAGTGAAGAAGCTATGGCCAAAGAAGAGTGATGAGCTACCTGAGAGAGACCTGTTTTCTGCAGAAGTTACAACACTAGGATCGATAAGGCACAAAAATATAGTGAGGCTTCTGGGTTGTTGTGACAATGGAAGAACTAGACTGTTGTTGTTTGATTATATTAGTAATGGGAGCTTTTCTGGATTGCTTCACGAGAAGAGAGTGTTCTTGGACTGGGATGCAAGGTACAAGATCATCTTGGGAGCAGCTCATGGTTTGACTTATCTTCACCATGATTGTATTCCTCCAATTGTTCATCGCGACATCAAGGCCAACAATATCTTAGTAGGACCACAATTTGAAGCTTTTCTAGCAGATTTTGGACTTGCAAAGCTGGTTGGTTCTTCAGATTCCTCAGAAGCTTCCAACACAGTTGCAGGCTCTTATGGGTATATTGCTCCTGAATATGGATACAGTTTGAGGATCACAGAGAAGAGTGATGTATACAGCTATGGTATTGTGCTCCTAGAGGCATTAACAGGGATGGAACCAACTGATCACCAGATTCCAGAGGGTGCCCATATTGTTACTTGGATCAACAAGGAACTCCGAGAGAGAAGAAGAGAATTCACATCAATTCTTGATCAGCAACTACTGATAATGTCTGGTACACAGACCCAAGAAATGCTTCAAGTGCTTGGGGTGGCTCTCCTCTGTGTGAACCCCAACCCAGAGGAACGACCCTCCATGAAAGATGTGACAGCAATGCTAAAAGAGATCAGACAAGAAAATGAGGATTACGAAAAGCCAAATTTTCTTGGCAAGGGAGTTCCTATCAACCCAAAAGCAACAGTTGACTGCTCTAGTTTCTCTAAATCATCTGAACCTCTAATTAGATCACCTACCTCATTGCCATAG 3267 0.4298 MSSNAITIFLLFLNISLFPAICALNQEGLSLLSWLSTFNTSSSAAFFSSWNPNHQNPCKWDYIKCSSAGFVSEITISSIDFHTTFPTQILSFNFLTTLVISDGNLTGEIPPSIGNLSSLIVLDLSFNALTGKIPPAIGKLSELQLLLLNSNSIVGEIPREIGNCSKLRQLELFDNQLSGKVPAEVGQLWGLAVFRAGGNSGIYGEIPMQMSNCQELVLLGLADTGISGQIPYSFGQLKKLKTLSIYTANLTGEIPPEIGNCSSLENLFVYQNQISGEIPAELGLLKNLRRVLLWQNNLAGSIPATLGNCLGLTVIDFSLNSLTGEIPMSFANLGALEELLLSDNNISGKIPPFIGSFSRMKQLELDNNLLSGEIPATIGQLKELSLFFAWQNQLSGSIPIELANCEKLQDLDLSHNFLSGSVPNSLFNLKNLTKLLLISNGLSGEIPPDIGNCTSLIRLRLGSNKFTGQIPPEIGLLSNLSFLELSENQFTGEIPPDIGNCTQLEMVDLHGNRLQGTIPTSFQFLVSLNVLDLSMNRMSGSVPENLGRLTSLNKLILNENYITGPIPNSLGLCKDLQFLDMSSNRITGSIPEEIGRLQGLDILLNLSRNSLSGPVPESFSNLSNLANLDLSHNMLTGSLRVLGNLDNLVSLNVSYNNFSGSIPDTKFFQDLPATVFSGNQKLCVNKNGCHSSGSLDGRISNRNLIICVVLGVTLTIMIMCAVVIFLLRTHGAEFGSSSDEENSLEWDFTPFQKLNFSVNDIVNKLSDSNVVGKGCSGMVYRVETPMKQVIAVKKLWPKKSDELPERDLFSAEVTTLGSIRHKNIVRLLGCCDNGRTRLLLFDYISNGSFSGLLHEKRVFLDWDARYKIILGAAHGLTYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVGSSDSSEASNTVAGSYGYIAPEYGYSLRITEKSDVYSYGIVLLEALTGMEPTDHQIPEGAHIVTWINKELRERRREFTSILDQQLLIMSGTQTQEMLQVLGVALLCVNPNPEERPSMKDVTAMLKEIRQENEDYEKPNFLGKGVPINPKATVDCSSFSKSSEPLIRSPTSLP* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1365 1088 Gene3D Phosphorylase Kinase; domain 1 732 843 - -
Vvi18g1365 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Vvi18g1365 1088 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Vvi18g1365 1088 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Vvi18g1365 1088 Pfam Leucine rich repeat 604 658 IPR001611 GO:0005515
Vvi18g1365 1088 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Vvi18g1365 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672|GO:0006468
Vvi18g1365 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Vvi18g1365 1088 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 390 1041 - -
Vvi18g1365 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 844 1058 - -
Vvi18g1365 1088 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Vvi18g1365 1088 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Vvi18g1365 1088 Gene3D Ribonuclease Inhibitor 24 191 IPR032675 -
Vvi18g1365 1088 Gene3D Ribonuclease Inhibitor 192 400 IPR032675 -
Vvi18g1365 1088 SMART serkin_6 765 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1365 1088 Gene3D Ribonuclease Inhibitor 402 691 IPR032675 -
Vvi18g1365 1088 SUPERFAMILY L domain-like 65 395 - -
Vvi18g1365 1088 Pfam Protein kinase domain 768 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1365 1088 ProSitePatterns Protein kinases ATP-binding region signature. 771 799 IPR017441 GO:0005524
Vvi18g1365 1088 Gene3D Transferase(Phosphotransferase) domain 1 844 1057 - -
Vvi18g1365 1088 PRINTS Leucine-rich repeat signature 408 421 - -
Vvi18g1365 1088 PRINTS Leucine-rich repeat signature 622 635 - -
Vvi18g1365 1088 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Vvi18g1365 1088 SMART LRR_typ_2 285 309 IPR003591 -
Vvi18g1365 1088 SMART LRR_typ_2 622 644 IPR003591 -
Vvi18g1365 1088 SMART LRR_typ_2 429 453 IPR003591 -
Vvi18g1365 1088 SMART LRR_typ_2 140 164 IPR003591 -
Vvi18g1365 1088 SMART LRR_typ_2 333 357 IPR003591 -
Vvi18g1365 1088 SMART LRR_typ_2 116 139 IPR003591 -
Vvi18g1365 1088 SMART LRR_typ_2 525 549 IPR003591 -
Vvi18g1365 1088 SMART LRR_typ_2 477 501 IPR003591 -
Vvi18g1365 1088 SMART LRR_typ_2 645 678 IPR003591 -
Vvi18g1365 1088 ProSiteProfiles Protein kinase domain profile. 765 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1365 1088 SUPERFAMILY RNI-like 295 663 - -
Vvi18g1365 1088 SUPERFAMILY Protein kinase-like (PK-like) 743 1050 IPR011009 -
Vvi18g1365 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 693 - -
Vvi18g1365 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 741 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1365 Vvi-Chr18 13857114 13860657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1365 23 1059 Receptor kinase-like Gene Family AT5G56040 49.005 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi18g1365 Pkinase 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1365 - - vvi:100259127 2104.72