Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1356 ATGGGGAATGATTTTGTGATTACCATTCTTGTCAGGCTGCTGCTAGTACATGGTTTTACGACCATGTCATGCTCTGTGATTTGTTCCAGCGCCACAAACCCTACTGATCAAGAGGCTTTGCTCGCCTTTAAATCCCAGATCACCTTCAAATCCGATGACCCATTGGTTAGTAACTGGACCACAGAGGCCTCCTTCTGTACCTGGGTTGGGGTCTCTTGCAGTTCTCATCGGCAAAGAGTCACTGCCTTGAATCTTTCTTTCATGGGTTTTCAAGGCACTATATCACCATGCATCGGGAACCTCTCCTTTCTCACAGTTCTGGACCTCAGCAACAACAGTATTCATGGTCAGCTTCCAGAGACTGTAGGTCATCTGCGCCGTTTAAGAGTCATCAACTTGAGATCCAACAACCTGGAGGGAAAAATTCCATCAAGCTTGTCACAGTGTCGAAGGCTTCAATGGCTGCTCCTCCGCTCAAACCGATTCCAAGGGAACATCCCCAAGGAGATAGCCCATCTCTCCCATCTGGAAGAACTAGACTTAAGTGAGAACTATCTAACAGGTACAATTCCGTCAACTATATTCAACATGTCCACCCTCAAATATATTGATCTCGTAGTAAACAACCTCTCTGGCGGCATCCCCACAACTATTTGTCACAAACTTCCAGACCTTGAAGTGTTGTATCTATCTGTCAATCCACTAGGCGGTCCATTTCCAGCCAGTTTATGCAATTGTACTAGTATTCGGAGTATCTCCTTTAACAGAAATGGCTTCATTGGAAGCATACCAGCAGACATAGGATGCTTATCCAAACTAGAGGGTCTGGGTTTAGCAATGAACAGACTAACAGGCACCATTCCACTGTCCTTAGGTAATCTTTCCAGGTTGGAAATCCTTGATTTCATGTATAACTATTTGGACGGTGGGATCCCTCAACAAGTAGCACAGCTATCTAGGATGAGAAGACTTCGAATCGCCTATAACAATCTTTCTGGTGGGATACCTGAAGCAATCTTCAATCTTACATCAGCTTATGCAATTAGTTTCATGGGTAATCGCCTATCAGGAAGCATTCCAGAGCTGACCAGCCTTGGCCTTCCAAAGCTTAATGAGCTCAACCTGCGAGACAATCGACTCAATGGTAAAATCCCAAATTCTATCTCGAATGCTTCGAGGCTCACTTTCTTAGAGCTATCAAACAATCTCTTAAATGGCCCAGTTCCCATGAGTTTGGGCAGTTTACGATTCCTTCGGACGCTCAATTTGCAGCGAAATCAACTCAGCAACGACCCATCTGAGAGGGAACTCCATTTCTTATCATCTTTGACAGGGTGTAGAGATTTGATCAATTTGGTTATTGGGAAGAATCCCATAAATGGAGTACTACCAAAATCTATTGGAAATCTATCGAGCTCACTAGAACTCTTCAGTGCAGATGCAACCCAGATCAAAGGCAGCCTTCCAATCAAAATGGGTAACTTGAGCAACTTGCTGGCACTCGAACTAGCTGGCAATGACTTGATTGGGACCTTGCCGTCTTCTCTTGGAAGCTTAAGTCGACTTCAGAGATTGCGTCTTTTCATCAACAAAATAGAAGGACCAATTCCCGATGAACTCTGTAACTTAAGATATTTGGGAGAACTGCTTTTGCATGAGAATAAGCTCTCAGGTCCAATACCAACCTGCATAGGGAATCTCAGTACAATGCAAGTAATCTCCCTATCTTCTAATGCGCTGAAATCAATACCTCCGGGCATGTGGAACCTCAACAATCTTTGGTTTCTCAATCTGTCCCTTAATTCTATAACTGGGTATCTTCCTCCACAGATTGAAAATCTGAAGATGGCAGAAACATTTGATCTATCCAAGAACCAACTATCTGGAAACATTCCCGGCAAAATATCAAATCTGAAGATGTTAAGGCGTCTCAACTTGTCTGACAATGCATTCCAAGGTAGTATTCCTGATGGTATCAGTGAGTTGGCTAGCTTAGAATCTTTGGATCTCTCTTCCAACAAACTATCAGGCATCATTCCAGAGTCGATGGAGAAGCTTCGCTATCTCAAATATCTGAATCTTTCTCTCAACATGCTAAGTGGCAAAGTTCCAACTGGAGGCCCCTTTGGAAACTTCACTGATCGATCTTTCGTGGGGAACGGTGAACTGTGTGGTGTTTCGAAACTCAAACTCCGAGCTTGCCCAACAGATTCTGGCCCGAAATCTAGGAAGGTAACATTTTGGCTCAAATATGTCGGCCTTCCCATTGCTTCAGTAGTAGTATTGGTTGCTTTCCTGATTATCATTATAAAGCGTCGAGGGAAGAAGAAGCAGGAAGCCCCCTCTTGGGTTCAATTCTCAGATGGTGTAGCGCCCAGATTGATTCCATATCATGAGCTCCTTTCTGCTACCAACAACTTTTGTGAAGCAAACCTGCTTGGAGTTGGGAGTTTTGGGTCTGTATACAAAGGAACTCTCTCAGACAATACAATTGCTGCCGTGAAAATTTTGGATTTGCAGGTGGAGGGGGCATTGAAATCTTTCGACGCGGAATGTGAAGTTCTGAGGAATGTTAGACATAGAAATCTCGTAAAAATCATAAGCTCTTGCAGTAATCTTGATTTTAGAGCTTTGGTTCTTCAGTACATGCCTAATGGGAGCCTAGAGAGGATGCTGTATTCTTACAACTACTTCTTAGATCTCACCCAGAGGCTCAACATCATGATAGACGTGGCAACAGCAGTTGAGTATCTTCACCATGGTTATTCAGAGACTGTAGTGCACTGCGATTTGAAGCCAAGCAATGTCCTTCTCGACGAAGAAATGGTCGCACATTTACGAATAGTATCAAATCAATCCCCCATCATATCCCCGTCCCAAAGATTGGAAGCGTGGTTACAATTCTTGCCTTTTGATTTGTGCAAAACAGAGTATGGTTCTGAAGGAAGAGTGTCAACGAAGGGAGATGTCTATAGCTACGGTATCATGCTGATGGAAACATTCACCAGAAAGAAACCAACTCATGAAATGTTTGTAGGAGGATTAAGCTTGAGGCAATGGGTGGATTCTTCTTTTCCTGATCTGATAATGGAGGTTGTCGATGCTAACCTGTTGGCACGAGACCAAAATAACACAAATGGGAATCTCCAAACTTGTCTCCTTTCCATAATGGGTTTGGGCTTGCAGTGTTCCTTGGATTCACCGGAGCAAAGGCTCGATATGAAAGAAGTTGTGGTTAGACTATCAAAGATCAGACAACAGTATATCAGCCAGACGTAA 3279 0.4358 MGNDFVITILVRLLLVHGFTTMSCSVICSSATNPTDQEALLAFKSQITFKSDDPLVSNWTTEASFCTWVGVSCSSHRQRVTALNLSFMGFQGTISPCIGNLSFLTVLDLSNNSIHGQLPETVGHLRRLRVINLRSNNLEGKIPSSLSQCRRLQWLLLRSNRFQGNIPKEIAHLSHLEELDLSENYLTGTIPSTIFNMSTLKYIDLVVNNLSGGIPTTICHKLPDLEVLYLSVNPLGGPFPASLCNCTSIRSISFNRNGFIGSIPADIGCLSKLEGLGLAMNRLTGTIPLSLGNLSRLEILDFMYNYLDGGIPQQVAQLSRMRRLRIAYNNLSGGIPEAIFNLTSAYAISFMGNRLSGSIPELTSLGLPKLNELNLRDNRLNGKIPNSISNASRLTFLELSNNLLNGPVPMSLGSLRFLRTLNLQRNQLSNDPSERELHFLSSLTGCRDLINLVIGKNPINGVLPKSIGNLSSSLELFSADATQIKGSLPIKMGNLSNLLALELAGNDLIGTLPSSLGSLSRLQRLRLFINKIEGPIPDELCNLRYLGELLLHENKLSGPIPTCIGNLSTMQVISLSSNALKSIPPGMWNLNNLWFLNLSLNSITGYLPPQIENLKMAETFDLSKNQLSGNIPGKISNLKMLRRLNLSDNAFQGSIPDGISELASLESLDLSSNKLSGIIPESMEKLRYLKYLNLSLNMLSGKVPTGGPFGNFTDRSFVGNGELCGVSKLKLRACPTDSGPKSRKVTFWLKYVGLPIASVVVLVAFLIIIIKRRGKKKQEAPSWVQFSDGVAPRLIPYHELLSATNNFCEANLLGVGSFGSVYKGTLSDNTIAAVKILDLQVEGALKSFDAECEVLRNVRHRNLVKIISSCSNLDFRALVLQYMPNGSLERMLYSYNYFLDLTQRLNIMIDVATAVEYLHHGYSETVVHCDLKPSNVLLDEEMVAHLRIVSNQSPIISPSQRLEAWLQFLPFDLCKTEYGSEGRVSTKGDVYSYGIMLMETFTRKKPTHEMFVGGLSLRQWVDSSFPDLIMEVVDANLLARDQNNTNGNLQTCLLSIMGLGLQCSLDSPEQRLDMKEVVVRLSKIRQQYISQT* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1356 1092 SUPERFAMILY RNI-like 83 468 - -
Vvi18g1356 1092 Gene3D Transferase(Phosphotransferase) domain 1 883 1092 - -
Vvi18g1356 1092 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 442 738 - -
Vvi18g1356 1092 ProSitePatterns Protein kinases ATP-binding region signature. 813 835 IPR017441 GO:0005524
Vvi18g1356 1092 SUPERFAMILY RNI-like 367 704 - -
Vvi18g1356 1092 ProSitePatterns Serine/Threonine protein kinases active-site signature. 926 938 IPR008271 GO:0004672|GO:0006468
Vvi18g1356 1092 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 883 1092 - -
Vvi18g1356 1092 Gene3D Ribonuclease Inhibitor 365 433 IPR032675 -
Vvi18g1356 1092 Gene3D Ribonuclease Inhibitor 190 248 IPR032675 -
Vvi18g1356 1092 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 369 437 - -
Vvi18g1356 1092 Gene3D Ribonuclease Inhibitor 249 364 IPR032675 -
Vvi18g1356 1092 Pfam Protein tyrosine and serine/threonine kinase 812 1080 IPR001245 GO:0004672|GO:0006468
Vvi18g1356 1092 ProSiteProfiles Protein kinase domain profile. 807 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1356 1092 FunFam Leucine-rich repeat receptor protein kinase EMS1 194 248 - -
Vvi18g1356 1092 SMART serkin_6 807 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1356 1092 SMART LRR_typ_2 222 246 IPR003591 -
Vvi18g1356 1092 SMART LRR_typ_2 173 197 IPR003591 -
Vvi18g1356 1092 SMART LRR_typ_2 662 685 IPR003591 -
Vvi18g1356 1092 SMART LRR_typ_2 318 342 IPR003591 -
Vvi18g1356 1092 SMART LRR_typ_2 495 519 IPR003591 -
Vvi18g1356 1092 SMART LRR_typ_2 415 438 IPR003591 -
Vvi18g1356 1092 SMART LRR_typ_2 367 391 IPR003591 -
Vvi18g1356 1092 SMART LRR_typ_2 125 149 IPR003591 -
Vvi18g1356 1092 SMART LRR_typ_2 638 661 IPR003591 -
Vvi18g1356 1092 SMART LRR_typ_2 567 590 IPR003591 -
Vvi18g1356 1092 SMART LRR_typ_2 101 124 IPR003591 -
Vvi18g1356 1092 Gene3D Ribonuclease Inhibitor 33 189 IPR032675 -
Vvi18g1356 1092 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Vvi18g1356 1092 Pfam Leucine rich repeat 546 603 IPR001611 GO:0005515
Vvi18g1356 1092 Pfam Leucine rich repeat 174 235 IPR001611 GO:0005515
Vvi18g1356 1092 Pfam Leucine rich repeat 659 699 IPR001611 GO:0005515
Vvi18g1356 1092 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vvi18g1356 1092 Pfam Leucine Rich Repeat 369 390 IPR001611 GO:0005515
Vvi18g1356 1092 ProSiteProfiles Leucine-rich repeat profile. 417 438 IPR001611 GO:0005515
Vvi18g1356 1092 Gene3D Ribonuclease Inhibitor 434 741 IPR032675 -
Vvi18g1356 1092 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 33 193 - -
Vvi18g1356 1092 SUPERFAMILY Protein kinase-like (PK-like) 784 1081 IPR011009 -
Vvi18g1356 1092 FunFam Serine-threonine protein kinase plant-type 787 882 - -
Vvi18g1356 1092 ProSiteProfiles Leucine-rich repeat profile. 664 685 IPR001611 GO:0005515
Vvi18g1356 1092 FunFam Predicted protein 262 361 - -
Vvi18g1356 1092 Gene3D Phosphorylase Kinase; domain 1 790 882 - -
Vvi18g1356 1092 PANTHER OS04G0122200 PROTEIN 317 1088 - -
Vvi18g1356 1092 PRINTS Leucine-rich repeat signature 176 189 - -
Vvi18g1356 1092 PRINTS Leucine-rich repeat signature 662 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1356 Vvi-Chr18 13735971 13739523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1356 13 633 Receptor kinase-like Gene Family AT3G47570 35.601 2.34e-84 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi18g1356 PK_Tyr_Ser-Thr 2.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1356 - - vvi:109121601 1554.27