Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1352 ATGAGTGGAAGCGTCAGGAAACGCAAATCTAAATGGGACTTGAAAGAAGAGAGTCAGTTTGCTAAAATCAGTTCAAACAATGTAAAGGCAGGTGATTCCAATCTAGATGATTGGTCTGATTTGGAAGCCAACGATGGGTTAAAATCTAATGATAACTTTGAATTGGACTCTTGGGAACCCTTGTCTGGTAATGGTGGTGCCCAGAAGGATGTTCGTGACAATAGAGAATTCAATGAGGTTTCAGAAACCATGCGGGGGTGGGTTGCAGATAACAGCTACAGCATGAGGACATCTCCTAGTTTTGATGGACGGGTACAAAAAAGATATGGCCGCTCCCCAAGAAACAATTGGAGACAGTCAAACAGGGGTCGAAGCAGAAGCAGAAGCAGGAGCCGGGGCCGGAGCAAGACCTTGGGTAGAAGTGTGAGTAGCAGCCGAAGTTGGAGCAGGAGCCGGAGCCGGAGCCGGAGCCGGAGTCTGAGTCGGAGCCCACATGTTGACTTTAAACGGGATTCGTATGGATTTAGTGAAAGAAGTAGAAATGGATCTGGAGTGTCATCTCAACGATGTCGAGATTTTGTTGCAGGGAGGTGCAGTAGAGGCAGTCAATGCAGGTTTCTTCATCAGGATAACCTCAATTACAGGGATGGTGGCCGCTCAGAAATTGACCAAGCAGAAAGCTGGGAAAGCAGACAGGAACACAGGAGAGCTTCAAGGTATGCTGATGCTGAAGGGCCTATAGATTACCCACGGGATAAGGTTGCTCGTGGTGGGTATGGGAATCAGTATGATGGGGAAAAGGATGTTCCTGTGAGGAACAACAGCAGATCTAATGTTCGTTGTAATGACTTTCTGAAAGGTAAGTGTCATAGGGGATCTTCATGCAAATTTTCCCATCATGGTGCTTCTGGTGATAGATATGATAGACATGATAGGGATCATGAGCGTAAGCGTGAACCACACAGAGTTGGTGGCATCCTGTGCAAGTATTTTGCAATGGGAAAATGCTTTAATGGTGATCGTTGCAGGTTTTCTCATGATGATCCACCTTGTGACAGTCCTGAAGGCAGGCCACGGGATGGTAAATGGGGTCATAATTTGGATGATGAGAACAAACCATGGGAGGATACAAAATGGAATGGTGCAGCTGCCTTAGACATTGCAAAGTCCTCTGAGTGGGGTAGCAATGATAATGGAAACAAGAATTTTACAGATTCAATGGTTGCAGACAAATCTATTGGTAATAGCTGGGGTCAGAGTTTGGATAATGAAAATAAACCATGGGCCACTTCAGCATCTAAAGACAAAGCTTCTGAGGGAGATTCATGGGGATCCTCTCATTGGAGAGCTAGAAGTAATATTGCAAACACGGGCATTCCAGAATTAATGAGTAGTGCTAAATTGTCTGTTAAAGAAGAGCCTCTTCTTACTCCCCTTGGTTCACAAGCACAAACCCTGAATGGAATCTCCAGGCCTGCTCATGAACAGAATATAATGCAAGATACTTCAAGCCTGCAGCTTGCAACTTCTTTTATGCGTCCAACAGTATCTGGAGATTCTTATGTTCAGCAGCATCTTGGTAAGAGTGGGGATAATACTGCAATGGTAGACGGTTCCTCACATGACAGGGTAAATTTCTCTGTACATACACTTCATGTGCCTCGACAAAGCTTCAATAAAGATGGTGATAATTTAGGTTCTCAACCTCCTTTGAGTTTTAACGAAACTAGTCAAAGCCAACATATGTGCAATTTAAATCCCTTAAATGGACATACAATCGACTTGAATGGACCAGTGGAACGGATAAACTCTCCTTTGAATCTGCAAAGCCAGACTCAGTTTTGTCAGGGGGAATCTGTTGAGACACCAGAAATGATGGAATGCAAAGTGCCTCAAGTAATCTCTGGAACCCCTAGGAATTTTATTACCAATAATCCAGTTGGTCAAATGTCTAGTCTTTCAGAATCTTTGGCTCAGGTATTTGGAAATGGGCAGCAACTTCTTCAGCCATATGCTGTGCTGAACACCCCCAATTCTATGGATTTGGTGTCTTCCCATTCTAATACTGCAGGTCTTGTTCCATCCATTACATCAATGACTGTTCAGCCTAATGCAGCTACATGTTTCCAGGAGCAGTATCAAGCTGAAAGCTTAGAGCCCAGTAAGCCTGGAAGCAGTAGCCAACCCCATGGGTATTCGTTAAATCCCAGTGAGCAGAAAACTCTTGTGCCGTCAAAAGGTTTCTCTCTATCAATGATGTCTGCTAGTGCTGGGACCAATTCTGCCGAAATGATCAAGATTGGCAATTCCGAGGATGAACATTGCAAGAGTCCAAAGATGAAGCAACAGGAGCCAGTTGCTAATTCAGAAGTGAAGGGAAATATCAAAGAAGTGGCTGAAGAATGCAGGCAAGAGCTAGAAAAGGGTCATCCAGAGAATCTAGATGCAGATGGTGGGGTTGATGAGGGCAATAGAATCAAGGATGAGAAGGGGATGCGGATCTTCAAAAATGCACTGGTGGAGTTTGTGAAGGAGATTCTAAAGCCCACCTGGAAGGAAGGGCAGATGAGCAGGGAGGTTCACAAAACCATAGTGAAGAAAGTGGTGGATAAAGTGACTGGTACTATTCAAGGAGAGCATGTCCCAAAGACACAAGAAAAAATTGACCAGTATCTATCATATTCTAAACCCAAGCTTACCAAACTTGTACAGGCATATGTGGAGAAATTTCTGAAGAGTTAG 2742 0.4424 MSGSVRKRKSKWDLKEESQFAKISSNNVKAGDSNLDDWSDLEANDGLKSNDNFELDSWEPLSGNGGAQKDVRDNREFNEVSETMRGWVADNSYSMRTSPSFDGRVQKRYGRSPRNNWRQSNRGRSRSRSRSRGRSKTLGRSVSSSRSWSRSRSRSRSRSLSRSPHVDFKRDSYGFSERSRNGSGVSSQRCRDFVAGRCSRGSQCRFLHQDNLNYRDGGRSEIDQAESWESRQEHRRASRYADAEGPIDYPRDKVARGGYGNQYDGEKDVPVRNNSRSNVRCNDFLKGKCHRGSSCKFSHHGASGDRYDRHDRDHERKREPHRVGGILCKYFAMGKCFNGDRCRFSHDDPPCDSPEGRPRDGKWGHNLDDENKPWEDTKWNGAAALDIAKSSEWGSNDNGNKNFTDSMVADKSIGNSWGQSLDNENKPWATSASKDKASEGDSWGSSHWRARSNIANTGIPELMSSAKLSVKEEPLLTPLGSQAQTLNGISRPAHEQNIMQDTSSLQLATSFMRPTVSGDSYVQQHLGKSGDNTAMVDGSSHDRVNFSVHTLHVPRQSFNKDGDNLGSQPPLSFNETSQSQHMCNLNPLNGHTIDLNGPVERINSPLNLQSQTQFCQGESVETPEMMECKVPQVISGTPRNFITNNPVGQMSSLSESLAQVFGNGQQLLQPYAVLNTPNSMDLVSSHSNTAGLVPSITSMTVQPNAATCFQEQYQAESLEPSKPGSSSQPHGYSLNPSEQKTLVPSKGFSLSMMSASAGTNSAEMIKIGNSEDEHCKSPKMKQQEPVANSEVKGNIKEVAEECRQELEKGHPENLDADGGVDEGNRIKDEKGMRIFKNALVEFVKEILKPTWKEGQMSREVHKTIVKKVVDKVTGTIQGEHVPKTQEKIDQYLSYSKPKLTKLVQAYVEKFLKS* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1352 913 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
Vvi18g1352 913 ProSiteProfiles Zinc finger C3H1-type profile. 322 349 IPR000571 GO:0046872
Vvi18g1352 913 MobiDBLite consensus disorder prediction 85 101 - -
Vvi18g1352 913 Pfam RNA-binding, Nab2-type zinc finger 190 208 - -
Vvi18g1352 913 MobiDBLite consensus disorder prediction 223 272 - -
Vvi18g1352 913 Gene3D - 273 350 - -
Vvi18g1352 913 MobiDBLite consensus disorder prediction 713 741 - -
Vvi18g1352 913 MobiDBLite consensus disorder prediction 121 135 - -
Vvi18g1352 913 MobiDBLite consensus disorder prediction 301 318 - -
Vvi18g1352 913 MobiDBLite consensus disorder prediction 414 446 - -
Vvi18g1352 913 SMART c3hfinal6 186 210 IPR000571 GO:0046872
Vvi18g1352 913 SMART c3hfinal6 276 301 IPR000571 GO:0046872
Vvi18g1352 913 SMART c3hfinal6 322 348 IPR000571 GO:0046872
Vvi18g1352 913 MobiDBLite consensus disorder prediction 136 150 - -
Vvi18g1352 913 MobiDBLite consensus disorder prediction 52 187 - -
Vvi18g1352 913 Pfam CCCH-type zinc finger 327 347 IPR041367 -
Vvi18g1352 913 SUPERFAMILY CCCH zinc finger 325 347 IPR036855 GO:0046872
Vvi18g1352 913 MobiDBLite consensus disorder prediction 295 318 - -
Vvi18g1352 913 MobiDBLite consensus disorder prediction 160 176 - -
Vvi18g1352 913 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 911 - -
Vvi18g1352 913 MobiDBLite consensus disorder prediction 223 251 - -
Vvi18g1352 913 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 299 IPR000571 GO:0046872
Vvi18g1352 913 ProSiteProfiles Zinc finger C3H1-type profile. 275 302 IPR000571 GO:0046872
Vvi18g1352 913 MobiDBLite consensus disorder prediction 347 376 - -
Vvi18g1352 913 Gene3D - 176 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1352 Vvi-Chr18 13682660 13687105 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi18g1352 zf-CCCH_4 1.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1352 - - vvi:100267803 1761.89