Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1350 ATGGGTAGGTGGTGGTTTTGGGCATTGTTTGGTGTGGTGTTGGTGCTTTCTGTAAATGGGTATCCTGAAGAGGATCTGGTAGTGAGGTTGCCTGGTCAGCCAGAGGTTGGTTTCAGGCAGTTTGCTGGGTATGTTGATGTGGATGTCAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGACGACCCTGATACAAAGGCCCTCACTCTTTGGCTCAATGGAGGCCCTGGATGCTCCTCGATGGGTGGGGGTGCCTTTACAGAGTTGGGTCCATTTTTTCCCTCCGGCGATGGTCGGGGCCTAAGAAGAAATTCAAAATCTTGGAATAAAGCATCAAATCTCCTCTTTGTTGAGTCTCCTGCTGGGGTGGGATGGTCATACTCAAATACAACTTCAGATTACACTTGTGGGGATGCCTCCACTGCAAGGGACATGCGTGTATTCATGATGAAATGGCTTGAAAAATTTCCAGCATTTAAATCCAGAGCACTGTTCCTCACTGGGGAAAGCTATGCAGGGCATTATATACCACAGTTGGCTGTTGCCCTTCTGGACTACAATTCACATTCAACTGGTTTCAAGTTTAACCTTAAAGGAGTGGCTATTGGGAATCCACTTCTCAGACTTGATCGGGATAGTGCTGCAACATATGAATTCTTTTGGTCACACGGAATGATTTCTGATGAAATTGGGCTCACTATCACAAAAGAGTGTGATTTCGATGATTATGTCTATGCAAGTCCTCACAATGTATCATTTTCATGCAACCAAGCTTTATCAGAAGCGAATAGCATTGTTGGTGAATATATAAACAATTATGATGTAATTCTTGACGTATGTTATCCAGCTATAGTGGAACAAGAGCTACGGCTGCGGAGAATGGCCACTAAGATGAGTGTTGGGATCGATGTGTGTATGACCTATGAAAGATCTTTCTATTTCAACCTTCCTGAGGTTCAGAAGGCTCTTCATGCAAATCGAACTGGTTTGAATTATAGGTGGACTATGTGCAGTGGTGTTCTGAATTATAGCGAAACTGATGGTAACATCGACATCCTCCCCTTGCTTAAAAGGATTGTTCAGAATAGCATTCCTGTTTGGGTTTTCAGCGGGGATCAAGATTCAGTTGTACCACTGCTGGGCTCCCGGACACTCATCCGTGAACTAGCTCAAGAGATGAAGTTCAAGATCACAGTTCCATTTGGAGCTTGGTTTCACAAAGGCCAGGTGGGAGGATGGGCAACTGAGTATGGAAATTTATTGACCTTTGCAACTGTAAGGGGTGCTGCTCATATGGTGCCTTATGCACAGCCGTCCAGAGCTTTGCACCTGTTCAGTTCATTTGTTCGAGGGCGGAGATTGCCAAACACAACCCGTCCATCCATTGATGATTAA 1404 0.4487 MGRWWFWALFGVVLVLSVNGYPEEDLVVRLPGQPEVGFRQFAGYVDVDVKAGRSLFYYFVEAEDDPDTKALTLWLNGGPGCSSMGGGAFTELGPFFPSGDGRGLRRNSKSWNKASNLLFVESPAGVGWSYSNTTSDYTCGDASTARDMRVFMMKWLEKFPAFKSRALFLTGESYAGHYIPQLAVALLDYNSHSTGFKFNLKGVAIGNPLLRLDRDSAATYEFFWSHGMISDEIGLTITKECDFDDYVYASPHNVSFSCNQALSEANSIVGEYINNYDVILDVCYPAIVEQELRLRRMATKMSVGIDVCMTYERSFYFNLPEVQKALHANRTGLNYRWTMCSGVLNYSETDGNIDILPLLKRIVQNSIPVWVFSGDQDSVVPLLGSRTLIRELAQEMKFKITVPFGAWFHKGQVGGWATEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVRGRRLPNTTRPSIDD* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1350 467 Gene3D - 355 454 - -
Vvi18g1350 467 Gene3D - 308 344 - -
Vvi18g1350 467 FunFam Carboxypeptidase 355 454 - -
Vvi18g1350 467 Pfam Serine carboxypeptidase 32 454 IPR001563 GO:0004185|GO:0006508
Vvi18g1350 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 130 IPR001563 GO:0004185|GO:0006508
Vvi18g1350 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 107 119 IPR001563 GO:0004185|GO:0006508
Vvi18g1350 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Vvi18g1350 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 180 IPR001563 GO:0004185|GO:0006508
Vvi18g1350 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 441 IPR001563 GO:0004185|GO:0006508
Vvi18g1350 467 SUPERFAMILY alpha/beta-Hydrolases 16 461 IPR029058 -
Vvi18g1350 467 ProSitePatterns Serine carboxypeptidases, serine active site. 169 176 IPR018202 GO:0004185
Vvi18g1350 467 Gene3D alpha/beta hydrolase 21 284 IPR029058 -
Vvi18g1350 467 FunFam Carboxypeptidase 21 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1350 Vvi-Chr18 13668059 13671210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1350 314 457 Calmodulin-binding Proteins AT2G22960 27.211 5.09e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1350 K16297 - vvi:100262647 960.674