Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1343 ATGATGAAACAAAATGGTATTCTTGTCCATTCGACTGGAGGGCGGTCGACTCTCCCCCCTTTCTTCCACCATAAGTATCACCCACAACATCTTCATTACTCCACGAAACGTTCTCTCAGAGTTGTTAAAGCAGCCATGTCTAATACAGCTGGTCAGGTCATTAAATGCAAGGCTGCGGTTTCATGGGAGGCAGGGAAGCCCCTGGTGATTGAAGAAGTGGAGCTGGCTCCACCACAGGCAAATGAAGTTCGTATCAAGATCCTTTTCACCTCTCTCTGTCACACTGATGTTTACTTCTGGGAGGCCAAGGGACAAAAACCAGCATTTCCTCGGATATTTGGCCATGAAGCTGCAGGAGTGGTTGAGAGCGTGGGTGAGGGCGTAACGGATCTCAAACCAGGAGACACTGTCCTCCCGGTGTTCACCGGAGAGTGCAAGGAGTGCCGGCACTGTAAATCAGAAGAGAGCAACATGTGTGACCTCCTTAGGATAAATACGGACAGGACTGTTATGCTGAGTGATGGCAAATCGAGGTTCAGCGCTAAGGGAAAGCCCATCTACCATTTCCTTGGGACCTCCACGTTCAGCGAATACACCGTTGCCCATGTTGGCAGTGTGGCCAAAATCAATCCTGCTGCCCCACTTGACAAAGTTTGCGTTCTTAGTTGTGGAATATCTACAGGTCTGGGTGCTGCTATCAATGTTGCAAAACCCAAAAAGGGCTCATCTGTTGCAGTTTTTGGATTGGGGGCTGTAGGCCTTGCAGCTGCTGAAGGGGCTAGGATTTCTGGGGCATCAAGGATCATCGGTGTCGATTTGAACGCCAGTAGATTTGAACAAGCCAAGAAGTTTGGTGTGACCGAGTTCGTGAACCCCAAAGATCATGACAAACCTGTTCAAGAGGTGATTGCTGAGATGACCGATGGAGGAGTTGACCGGAGCATAGAGTGTACTGGAAGCGTTGCCGCCATGATCTCTGCATTTGAATGTGTTCATGATGGTTGGGGCGTTGCTGTTCTTGTTGGTGTGCCAAACAGAGACGATTCATTCAAAACTCACCCCATAAATCTACTGAATGAGAGGACTCTCAAGGGCACATTTTTTGGCAACTTCAAACCCCGCACCGATCTTCCCCGTCTCGTGGAGAAATACGTGAATAAGGAGCTGGACCTGCAACTGGAGAAATTCATCACCCATGAAGTCTCCTTCTCTGATATCAACAAAGCATTTGACTACATGCTGAAGGGGGAAGGCCTCCGGTGCATCATCCGCATGGGAGCCTAG 1284 0.493 MMKQNGILVHSTGGRSTLPPFFHHKYHPQHLHYSTKRSLRVVKAAMSNTAGQVIKCKAAVSWEAGKPLVIEEVELAPPQANEVRIKILFTSLCHTDVYFWEAKGQKPAFPRIFGHEAAGVVESVGEGVTDLKPGDTVLPVFTGECKECRHCKSEESNMCDLLRINTDRTVMLSDGKSRFSAKGKPIYHFLGTSTFSEYTVAHVGSVAKINPAAPLDKVCVLSCGISTGLGAAINVAKPKKGSSVAVFGLGAVGLAAAEGARISGASRIIGVDLNASRFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTDGGVDRSIECTGSVAAMISAFECVHDGWGVAVLVGVPNRDDSFKTHPINLLNERTLKGTFFGNFKPRTDLPRLVEKYVNKELDLQLEKFITHEVSFSDINKAFDYMLKGEGLRCIIRMGA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1343 427 SUPERFAMILY GroES-like 49 231 IPR011032 -
Vvi18g1343 427 FunFam Alcohol dehydrogenase class-P 228 366 - -
Vvi18g1343 427 CDD alcohol_DH_plants 54 424 - -
Vvi18g1343 427 SUPERFAMILY GroES-like 374 424 IPR011032 -
Vvi18g1343 427 PANTHER ALCOHOL DEHYDROGENASE 51 423 - -
Vvi18g1343 427 Pfam Alcohol dehydrogenase GroES-like domain 81 207 IPR013154 -
Vvi18g1343 427 FunFam alcohol dehydrogenase 1-like isoform X1 64 227 - -
Vvi18g1343 427 Gene3D - 64 417 - -
Vvi18g1343 427 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 214 386 IPR036291 -
Vvi18g1343 427 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 114 128 IPR002328 GO:0008270|GO:0016491
Vvi18g1343 427 Pfam Zinc-binding dehydrogenase 251 381 IPR013149 -
Vvi18g1343 427 Gene3D - 228 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1343 Vvi-Chr18 13582120 13584804 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1343 81 417 Monolignol Biosynthesis Gene Families AT2G21730 23.529 7.18e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1343 K18857 - vvi:100233102 744.191