Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1338 ATGGGGTTCTCACCTTTCAAAATGCCCATTTACAGTTCAAAGTGTGGTCTAATAATTATGTTTCTTATGAGTTTATGTTGTATTCATCCTATAGGGTTTTCACAAGGCGAGCTCAGAGTTGGCTTCTACTCTAGAACATGTCCCCAAGCCGAATCCATTGTCAGCTCTGTTGTTAGAGAAGCTACCCTCTCTAACCCCAGGACCCCTGCACTATTGCTTAGGATGCAGTTCCATGACTGCATGGTTGAGGGCTGTGACGGATCGATTCTGATTGATAATGGGAACGCAGGCGAGAGAATGGCAACTGGTAACCAAGGTCTTGGTGGTTTTGATGTGATAGATAAAGCCAAGGCAATGCTCGAAAGGGTTTGCAAAGGAGTGGTTTCTTGCTCAGACATAGTGGCTTTGGCTGCCAGAGATGCTGTGTTCTTGAGAAATGGACCATTTTATCAGGTGCCAACCGGCCGGAGAGATGGCCGGGTCTCAGATATATCCCATGCTGCCAACATCCCAGAAGTCGGTGACTCTATCCAACTTCTCAAATCAAAGTTCAGGCAAAAGGGTCTTTCAGATAGAGACCTTGTTCTTCTCAGTGCTGCGCATACCATTGGGACAACTGCATGCTTCTTCATAGAGACGAGACTCTACAACTTCACCCAAGGCGGTGGCTCGGATCCTGCAATCAACCCTGACTTCCTCCCAAAACTAAAGGCCAAGTGCCCGTTTCGGGGAGATATCAATGTCCGACTGCCACTTGATCCGGTGACTGAAGAAACGTTTGATGTTCAGATATTGAGGAATATCAGGGATGGATTAGCAGTGATAGAGAGTGATGCTAGGCTTTACGATGACAGAGCAACCAAGCGGGTGGTGGACTCCTACATTGGGCAGCGCGGGAGTTCTGCATTTGGGCAGGACTTTGCAGAGGCAATGGTGAAGATGGGTAACATTGGAGTGAAGACGGGTTCACAAGGAGAGATCAGACGTATTTGCACAGCTGTTAATGGAGTCCCTTTGTAG 1020 0.4775 MGFSPFKMPIYSSKCGLIIMFLMSLCCIHPIGFSQGELRVGFYSRTCPQAESIVSSVVREATLSNPRTPALLLRMQFHDCMVEGCDGSILIDNGNAGERMATGNQGLGGFDVIDKAKAMLERVCKGVVSCSDIVALAARDAVFLRNGPFYQVPTGRRDGRVSDISHAANIPEVGDSIQLLKSKFRQKGLSDRDLVLLSAAHTIGTTACFFIETRLYNFTQGGGSDPAINPDFLPKLKAKCPFRGDINVRLPLDPVTEETFDVQILRNIRDGLAVIESDARLYDDRATKRVVDSYIGQRGSSAFGQDFAEAMVKMGNIGVKTGSQGEIRRICTAVNGVPL* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1338 339 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Haem peroxidase superfamily signature 69 83 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Haem peroxidase superfamily signature 253 268 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 ProSiteProfiles Plant heme peroxidase family profile. 37 335 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Vvi18g1338 339 PRINTS Plant peroxidase signature 108 121 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Plant peroxidase signature 71 91 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Plant peroxidase signature 251 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Plant peroxidase signature 47 66 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Plant peroxidase signature 309 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Plant peroxidase signature 267 284 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Plant peroxidase signature 127 137 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PRINTS Plant peroxidase signature 146 161 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 PANTHER PEROXIDASE 25-RELATED 23 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 Gene3D Peroxidase, domain 2 171 314 - -
Vvi18g1338 339 Pfam Peroxidase 55 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1338 339 Gene3D - 41 335 - -
Vvi18g1338 339 FunFam Peroxidase 41 187 - -
Vvi18g1338 339 CDD secretory_peroxidase 37 334 IPR033905 GO:0004601|GO:0042744
Vvi18g1338 339 FunFam Peroxidase 171 314 - -
Vvi18g1338 339 SUPERFAMILY Heme-dependent peroxidases 38 335 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1338 Vvi-Chr18 13521207 13522494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1338 18 335 Peroxidase AT1G77100 57.764 4.82e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1338 K00430 - vvi:100245373 680.248