Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1326 ATGTCTTTAGTTAGATCTGCAGAGCTATCTGCTAAAGCTTATGGTAATCCCAACCTCTATTCATTCAAGGGAAGCAGTACGGGCCCTGGCTTTTCTACTCAAATATTCCGCTCTGATAAGCGGAATATCGTGTACATGACTGAATCTTACTGTGGTGAGAGTAATGATCCAAAGTACTTAGTTGACTCTCCAACAGAAGAACTGATACACCCACCTAGTTCTGGCATTTCAGGAAGGCCATTTCACCCACAGGGTACCGCTTCTTACCAGCTCATAGCTGATTCTGTTTCCTCCATGACTCCTGAAGGCTCATTTTTTGAGTCAGACTACTTGGAGTGTGAAAGCCCAGATCAAATCAATTACAATGAAGACAAGATGAGATTGAAGCTTCAAGAATTGGAGAGAGCCCTTCTTGATGATAATGATGATGATGATGATCAAAGCATGGAGATTGATGCTGATTGGGCTGATCCGATTGGGAATGAACTCCTCCATGACTCACCCAAGGAGTCTTCATCCTCAGATTCTAACCTAAGTAGCATCAGCAGCAACAAAGAAGTATCACTAATACCTACTCGGACCACCAAGCAGTTGCTTTTTGATTGTGCTGCTGCACTTGCAGAAGGAAACATTGATGGAGCATCAGCCATGATAAGTGAACTCCGGCAGAAAGTCTCAATCCAAGGAGATCCTCCACAGAGGATTGCAGCCTACATGGTGGAAGGTCTTGCAGCTCGCATGGCTTCCTCTGGAAAATGCCTCTATAAAGCTCTGAAATGCAAAGAGCCCCCATCTTTGGACCGGCTCTCAGCTATGCAGATCCTCTTTGAGGTATGCCCATGTTTTAGATTTGGACTTACAGCAGCTAATGGTGCAATCACAGAGACATTTAAAGATGAGAAGAGAGTTCATATAGTAGATTTTGAAATAAACCAAGGGAGTCAATATATATTGCTGTTACAATCGCTTGCAGAACAGGCAGGTAAAAAGCCCCACATTAGGTTAACTGGAGTGGACGACCCCGACTCAATCCAGCGTGCTGTAGGGGGCCTAAAAGTCATTGGGCAGAGGCTTGAGAATCTAGCAGAAGATCTCAATTTGTCATTTGAATTTCAAGCAGTGGCTTCAAAGACTTCAAATGTCACTCCGGGAATGCTCAACTGTAAGCCTGGAGAAGCACTGGTAGTAAACTTTGCTTTCCAGCTGCACCACATGCCTGATGAGAGCGTCTCAACAGTAAACCAGCGAGATCAGCTTCTCCGGATGGTTAAGAGCTTGAACCCAAAACTTGTGACTATTGTTGAACAAGACATGCACACAAACACAGCCCCTTTTTTCCCGAGATTTGTCGAAGCCTACAACTACTACTCATCTATGTTCGACTCTCTTGATGCAACTCTCCCCAGGGGCAGCCAGGACAGAGTGAATGTTGAAAGACAGTGCCTGGCACGGGACATAGTTAACATTGTAGCATGTGAGGGTGAAGAAAGAGTAGAACGGTACGAGGCTGCAGGGAAATGGAGGGCAAGGATGATGATGGCTGGTTTCACTTCATGTCCAATGAGTCAGAATGTGAGTGATACAGTCCGGAAACTCATAAGGGAATACAGTGAAAGGTACACAGCAAAGGAGGAAATGGGTGCTCTCCATTTTGGGTGGGAAGATAAGAGCTTGATTTTTGCTTCAGCATGGAGGTGA 1698 0.4511 MSLVRSAELSAKAYGNPNLYSFKGSSTGPGFSTQIFRSDKRNIVYMTESYCGESNDPKYLVDSPTEELIHPPSSGISGRPFHPQGTASYQLIADSVSSMTPEGSFFESDYLECESPDQINYNEDKMRLKLQELERALLDDNDDDDDQSMEIDADWADPIGNELLHDSPKESSSSDSNLSSISSNKEVSLIPTRTTKQLLFDCAAALAEGNIDGASAMISELRQKVSIQGDPPQRIAAYMVEGLAARMASSGKCLYKALKCKEPPSLDRLSAMQILFEVCPCFRFGLTAANGAITETFKDEKRVHIVDFEINQGSQYILLLQSLAEQAGKKPHIRLTGVDDPDSIQRAVGGLKVIGQRLENLAEDLNLSFEFQAVASKTSNVTPGMLNCKPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTIVEQDMHTNTAPFFPRFVEAYNYYSSMFDSLDATLPRGSQDRVNVERQCLARDIVNIVACEGEERVERYEAAGKWRARMMMAGFTSCPMSQNVSDTVRKLIREYSERYTAKEEMGALHFGWEDKSLIFASAWR* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1326 565 MobiDBLite consensus disorder prediction 156 184 - -
Vvi18g1326 565 ProSiteProfiles GRAS family profile. 186 565 IPR005202 -
Vvi18g1326 565 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 170 559 IPR005202 -
Vvi18g1326 565 MobiDBLite consensus disorder prediction 166 184 - -
Vvi18g1326 565 Pfam GRAS domain family 196 565 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1326 Vvi-Chr18 13411198 13412895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1326 1 565 GRAS Transcription Factor Family AT1G21450 59.284 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi18g1326 GRAS 4.6e-132 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1326 - - vvi:100253954 1084.32