Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1325 ATGGAGGAATCTAGTGATGATGCAAAGACTTGCCCTCGAGGGCACTGGAGACCTGCAGAGGACGAAAAGCTCAGGCAACTTGTGGAAGAATATGGTGCCCAGAACTGGAACTCGATTGCAGAGAAGCTCCAAGGAAGATCGGGGAAGAGTTGCAGATTGAGGTGGTTTAATCAACTCGATCCTAGAATTAACAGAAAGCCATTTACAGAAGAAGAAGAGGAAAGGCTTCTCGCAGCACATCGCATTCATGGAAACAAGTGGGCACTAATTTCCAGGCTATTTCCAGGTCGAACAGATAATGCTGTGAAGAATCATTGGCATGTAATAATGGCAAGAAAGCAAAGGGAGCAATCCAAGCTATGTGGGAAGAGGAGTTACAAAGATGTTCTTAGTGATTCCAACACTTCCTCTAATGGTTTTCGAGGAAGTAATTCAAGGTCTCAACAGTATAGCTCAGCAAACCGGCTTGAGAATAGTAGGCTCTTTGAATTCTTGAACCCAAATAAAGAAGGGATTTTCTCAATATCACCCTCAAGTTCTTCACCTTCTTGGACTTTTGCCCGATCAATATCTAAGGCTACAAACAACTCATCTTCTACAGATTTACTCAGAAGAGGAGGAAGAGATCATTTCAATTCTTGTTCTAGTGATGGCATCATGGACAGCCAAAATAGTTTAGACCGATCTCTCTACAGATACTTTTCTAATTCTTCGGCATATGGCGGATATAGGACTTCCACTGCATTTGGGTTTCCGAACTACAAGAGGGTAGTTTCAGGTCCAGTTGGGTACTCTAAACTCGGTGATCCCCACGGAATGCTCAAGAGAGAGTTCGTGAATTTTGGTGATAACTCGCCCACATTTGCAAAGATGATAATGACCAACCAGCAAGAGCAAGAAGATGAATCCATCAAACAAAAGAATATTCCATTCATAGATTTTCTTGGCGTGGGAATTTCTTCCTGA 966 0.4265 MEESSDDAKTCPRGHWRPAEDEKLRQLVEEYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSYKDVLSDSNTSSNGFRGSNSRSQQYSSANRLENSRLFEFLNPNKEGIFSISPSSSSPSWTFARSISKATNNSSSTDLLRRGGRDHFNSCSSDGIMDSQNSLDRSLYRYFSNSSAYGGYRTSTAFGFPNYKRVVSGPVGYSKLGDPHGMLKREFVNFGDNSPTFAKMIMTNQQEQEDESIKQKNIPFIDFLGVGISS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1325 321 PANTHER MYB PROTEIN-RELATED 13 160 - -
Vvi18g1325 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Vvi18g1325 321 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Vvi18g1325 321 CDD SANT 76 107 IPR001005 -
Vvi18g1325 321 FunFam MYB transcription factor 13 64 - -
Vvi18g1325 321 CDD SANT 16 57 IPR001005 -
Vvi18g1325 321 MobiDBLite consensus disorder prediction 119 152 - -
Vvi18g1325 321 Gene3D - 66 125 - -
Vvi18g1325 321 ProSiteProfiles Myb-like domain profile. 13 59 IPR001005 -
Vvi18g1325 321 Gene3D - 13 64 - -
Vvi18g1325 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 59 IPR017930 -
Vvi18g1325 321 Pfam Myb-like DNA-binding domain 16 76 - -
Vvi18g1325 321 SMART sant 64 112 IPR001005 -
Vvi18g1325 321 SMART sant 12 61 IPR001005 -
Vvi18g1325 321 FunFam MYB transcription factor 66 137 - -
Vvi18g1325 321 SUPERFAMILY Homeodomain-like 12 106 IPR009057 -
Vvi18g1325 321 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1325 Vvi-Chr18 13397962 13399162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1325 11 120 MYB Transcription Factor Family AT1G17950 82.727 7.71e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi18g1325 Myb_DNA-bind_6 9.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1325 K09422 - vvi:100253993 629.787