Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1302 | ATGGAGGATTTCTACGAGACTAGAATATCAGAGGTTGATGGTCATATGGTAGCCTTCTTTGGTGTTTTTGATGGTCATGGAGGTTCAAGAACCGCGGAATACCTCAAAAACAATCTTTTCAAGAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTCAGGCAAGAGATGCTGGCTCAACTGCCTCAACTGCTGTGCTCGTTGGTGACCGGCTGCTTGTTGCAAATGTGGGAGATTCTAGAGTGGTTGCTTGTAGAGCTGGTTCAGCTATCCCACTGTCCACTGATCACAAACCTGATAGATCTGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAAACTTCTTAAGGCATATGTTGTTGCTGATCCAGAAATTCAGGAAGAAGAAATTGATGGTGTAGATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAAAACTTATACATGAGGCTTATGCACGAGGGAGCTCTGACAACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGA | 711 | 0.429 | MEDFYETRISEVDGHMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKSAIAEVFRKTDADYLNEEKGQARDAGSTASTAVLVGDRLLVANVGDSRVVACRAGSAIPLSTDHKPDRSDERQRIEDAGGFVIWAGTWRVGGVLAVSRAFGDKLLKAYVVADPEIQEEEIDGVDFIIIASDGLWNVLSNKEAVAIVQDIMDAEAASRKLIHEAYARGSSDNITCVVVRFKNS* | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1302 | 236 | PANTHER | PROTEIN PHOSPHATASE | 1 | 233 | IPR015655 | GO:0004722|GO:0006470 | |
| Vvi18g1302 | 236 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 233 | IPR001932 | - | |
| Vvi18g1302 | 236 | CDD | PP2Cc | 1 | 233 | IPR001932 | - | |
| Vvi18g1302 | 236 | Gene3D | - | 1 | 236 | IPR036457 | - | |
| Vvi18g1302 | 236 | SMART | PP2C_4 | 1 | 231 | IPR001932 | - | |
| Vvi18g1302 | 236 | Pfam | Protein phosphatase 2C | 17 | 226 | IPR001932 | - | |
| Vvi18g1302 | 236 | SMART | PP2C_SIG_2 | 7 | 233 | IPR001932 | - | |
| Vvi18g1302 | 236 | ProSitePatterns | PPM-type phosphatase domain signature. | 19 | 27 | IPR000222 | GO:0043169 | |
| Vvi18g1302 | 236 | SUPERFAMILY | PP2C-like | 1 | 235 | IPR036457 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g1302 | Vvi-Chr18 | 13074199 | 13085529 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1302 | 1 | 236 | PP2C-type Phosphatase Gene Family | AT1G43900 | 77.119 | 1.44e-137 | 389 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1302 | K17506 | - | vvi:100260831 | 468.003 |