Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1301 ATGGCGGTGTTGAATCTTCACGTGAGCTCCAAAGCGGAGTTGAAGCGAAGGGAGAAGCAGAAGAAGAAAGCTAGGTCAGGGGGATTCGAGTCTCTAGGGCTGAGTCCCAATGTCTACAGGGCCATCAAGCGCAAGGGCTACCGAGTCCCCACTCCCATTCAGCGCAAGACCATGCCCCTCATTCTCTCTGGCTGCGACGTTGTTGCCATGGCCCGTACTGGTTCCGGAAAAACCGCCGCCTTCCTCATTCCGATGCTTGAGCGCTTGAAGCAACACGTCCCTCAGACCGGCGTTAGGGCTCTCATTCTCTCTCCTACTAGGGACCTGGCGCTTCAGACTTTGAAGTTCACCAAGGAACTCGCTCGATACACCGATGTTCGCATTAGTTTACTTGTTGGTGGTGATAGTATGGAAAGCCAGTTTGAAGAATTGGCACAGAATCCCGATATTATAATTGCAACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCATTGCGCACAGTGGAATACGTGGTGTTTGATGAAGCTGATTGTCTATTTGGCATGGGTTTTGCTGAGCAGTTGCATAAAATCCTTGCCCAGCTGAGTGATAATCGTCAGACCTTGCTTTTTAGTGCTACCTTACCAAGTGCTCTTGCAGAATTTGCCAAGGCTGGTCTACAGGACCCTCAACTTGTGCGTCTTGATTTGGATACTAAGATTAGCCCTGACTTGAAGGTTAACTTTTTCACCTTACGACACGAAGAAAAACTTGCTGCCTTGCTGTATTTGATAAGGGAACAAATCAGTTCTGATCAGCAGACATTAATATTTGTTTCCACAAAGCATCATGTGGAGTTCCTTAATGTCCTTTTTAGAGAAGAGGGCATTGAGGCTTCTGTATGTTATGGTGATATGGACCAAGATGCTCGCAAGATTCATATATCAAGGTTTAGATCAAGAAAGACCATGTTGCTAATTGTGACAGATGTTGCAGCTAGGGGCATTGACATCCCATTGCTCGATAATGTTGTTAATTGGGACTTTCCACCAAAACCTAAAATTTTTGTCCATCGAGTAGGGCGAGCTGCAAGGGCTGGTCGGACTGGTACTGCATTTTCTTTTGTGACATCTGAGGATATGCCTTACCTTTTAGATCTTCATCTCTTCCTCTCAAAACCTATTAGAGCTGCTCCCACTGAGGAGGAGGTTTTGCAAGATCCAGATGAAGTAATGTCCAAAATTGATCAAATAGTTGCAAATGGAGGAACTGTTTATGGGCGGCTCCCCCAGACAGTTATAGATCTTGTTTCAGACAGGGTTCGGGAACTTGTTGATTCATCTGCTGAACTGGCTTCTTTGCAGAAAACCTGTACAAATGCATTTCGCTTGTATTCAAAGACAAAACCTTCACCTTCTAGGGAGTCCATTAGAAGAGCAAAAGATCTACCCCGTGAAGGGTTGCATCCAATTTTCAAAAATGTACTAGGAGGTGGTGAATTAATGGCACTGGCTTTTTCTGAGCGCTTGAAAGCTTTCAGACCAAAGCAAACCATTTTGGAAGCTGAAGGTGAAGCTGCTAAATCAAAGAATTTCCAAGGTCCTGCTGTTGATGTGATGAAAAAGAAGAGGGCTATTCATGAAAAGGTCATTAATTTGGTACAACAGCAACGCTCTAGTGATCATGTGGCAAAGATGCAGGAAGTCGAACCTGAAATGGCTTATCCAAAGGATAAGGAGAAAAAAGGAGGCTCAAGTTCTAAAAGAAAGGCAAAGACCTTCAAGGATGAGGAGTACTTTATAAGTTCAGTGCCAACGAATCGCCATGCAGAGGCAGGACTCTCAGTAAGAGCTAATGAAGGTTTTGGGTCGAGCAGGTAA 1875 0.4501 MAVLNLHVSSKAELKRREKQKKKARSGGFESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLERLKQHVPQTGVRALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSDNRQTLLFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLKVNFFTLRHEEKLAALLYLIREQISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISRFRSRKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGRLPQTVIDLVSDRVRELVDSSAELASLQKTCTNAFRLYSKTKPSPSRESIRRAKDLPREGLHPIFKNVLGGGELMALAFSERLKAFRPKQTILEAEGEAAKSKNFQGPAVDVMKKKRAIHEKVINLVQQQRSSDHVAKMQEVEPEMAYPKDKEKKGGSSSKRKAKTFKDEEYFISSVPTNRHAEAGLSVRANEGFGSSR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1301 624 CDD SF2_C_DEAD 250 374 - -
Vvi18g1301 624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 231 IPR014001 -
Vvi18g1301 624 SMART helicmild6 284 365 IPR001650 -
Vvi18g1301 624 SMART ultradead3 46 246 IPR014001 -
Vvi18g1301 624 Pfam Helicase conserved C-terminal domain 254 365 IPR001650 -
Vvi18g1301 624 MobiDBLite consensus disorder prediction 1 29 - -
Vvi18g1301 624 Gene3D - 5 234 IPR027417 -
Vvi18g1301 624 Gene3D - 246 467 IPR027417 -
Vvi18g1301 624 Pfam DEAD/DEAH box helicase 51 218 IPR011545 GO:0003676|GO:0005524
Vvi18g1301 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 383 IPR027417 -
Vvi18g1301 624 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 27 55 IPR014014 GO:0003724
Vvi18g1301 624 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 255 404 IPR001650 -
Vvi18g1301 624 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 13 595 - -
Vvi18g1301 624 MobiDBLite consensus disorder prediction 565 588 - -
Vvi18g1301 624 CDD DEADc_DDX54 27 232 IPR033517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1301 Vvi-Chr18 13064045 13072493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1301 29 398 Eukaryotic Initiation Factors Gene Family AT1G72730 32.796 6.45e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1301 K14808 - vvi:100257398 1184.86