Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1300 ATGGTGAAAGAAACCGAGTATTACGATGTTCTTGGCGTTAGTCCCACTGCTTCGGAGGAGGAAATTAGGAAGGCTTACTATCTTAAGGCAAAGCAAGTTCATCCTGATAAAAATCCGAGTGACCCTTTGGCAGCTGAACGATTTCAGGTACTGGGTGAAGCTTATCAGGTTTTGAGTGATCCAATGCAAAGAGATGCGTATGATCGAAATGGAAAGTACTGCATATCTAAGGAGACCATGCTTGACCCAACTGCTGTCTTTGCTCTTCTTTTTGGAAGTGAACTTTTTGAGAACTACATAGGGCACCTAGCTGTGGCATCAATGGCTTCCTCTGAATTAGCTGAAGAAAGTGATAATCCTGAAAAATTACATGACAAGTTAAAGGCATGTTTGTTGGGCTTTTGTGCCCTTACTGTTTGTATAAACTTGCTATTATGCATCAGAGAAGCTGTCCAGAAAGAAAGAGAAGAGAGGCTTGCTAGATTACTAAAAGATTTCCTTAATCAATATGTTCAAGGTGACAAAAGAGGATTTTTACATTGTGCAGAATCTGAAGCCAAACGGCTTTCTGATGCAGTGTTTGGAGCTGATATTTTACACACTATTGGATATGTATATGCAAGACAGGCAGCACAAGAGCTTGGAAAAAAAGTCATTTATCTTGGAGTTCCATTTTTGGCTGAGTGGGTTCGTAATAAGGGACATTTCTGGAAGTCACAGATAACTGCAGCAAAAGGTGCTTTTCAGTTACTGCAACTTCAAGAAGACATCCGCCGACAATTTAAAATGGATGGTAGTGGCCCTGAAAATGATGTTGAATCACACATACGGATGAACAAGGACACACTTATGAACTCACTCTGGAAATTAAATGTTGTGGACATTGAAGTAACCCTTATACATGTGTGTCAACTGGTGCTACAAGAAAATAATGTCAAGAAGGAAGAACTTAAAGCTCGTGCTCTCGCTTTGAAATTATTAGGGAAAATATTTCAGAGGGAAAAGCTTGCCCGGAGTGGTGGAACATCAAAGAGTAGAAATGTTTCTGACATAAATGAAGAGGGAAGCAGTTCTGATAGCAGTGGTGAAGAGGATACACCAAGAGCACTTTCCTATCGAACCCCTCTAATCACTCAGGGCATTGGGAGACTCTTCAGGTGCCTGTGCAATCCGGCATTTGATGTGGATGATGAAGAAATCGTGTACAAAAGCAAATGA 1218 0.408 MVKETEYYDVLGVSPTASEEEIRKAYYLKAKQVHPDKNPSDPLAAERFQVLGEAYQVLSDPMQRDAYDRNGKYCISKETMLDPTAVFALLFGSELFENYIGHLAVASMASSELAEESDNPEKLHDKLKACLLGFCALTVCINLLLCIREAVQKEREERLARLLKDFLNQYVQGDKRGFLHCAESEAKRLSDAVFGADILHTIGYVYARQAAQELGKKVIYLGVPFLAEWVRNKGHFWKSQITAAKGAFQLLQLQEDIRRQFKMDGSGPENDVESHIRMNKDTLMNSLWKLNVVDIEVTLIHVCQLVLQENNVKKEELKARALALKLLGKIFQREKLARSGGTSKSRNVSDINEEGSSSDSSGEEDTPRALSYRTPLITQGIGRLFRCLCNPAFDVDDEEIVYKSK* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1300 405 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Vvi18g1300 405 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Vvi18g1300 405 CDD DnaJ 6 60 IPR001623 -
Vvi18g1300 405 Gene3D DnaJ domain 1 85 IPR036869 -
Vvi18g1300 405 SMART dnaj_3 5 63 IPR001623 -
Vvi18g1300 405 MobiDBLite consensus disorder prediction 341 367 - -
Vvi18g1300 405 MobiDBLite consensus disorder prediction 340 369 - -
Vvi18g1300 405 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vvi18g1300 405 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vvi18g1300 405 PRINTS DnaJ domain signature 63 82 IPR001623 -
Vvi18g1300 405 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vvi18g1300 405 Pfam DnaJ domain 6 68 IPR001623 -
Vvi18g1300 405 Pfam X-domain of DnaJ-containing 152 337 IPR026894 -
Vvi18g1300 405 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 355 - -
Vvi18g1300 405 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1300 Vvi-Chr18 13043231 13050529 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1300 7 68 C2H2 Transcription Factor Family AT1G74250 46.269 1.86e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1300 - - vvi:100252265 722.62