Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1297 ATGGATAGTCCTAGTTTGCCGTCCCGTGTGCTCATTGCGTACGATGCGACAAAGGATTTGGGTAACGATGAGATTCAGGTCACCATAAAAGAAGTGCGAATGAGGGGTGACATTCTTCGTCGAGGCGACACGCTGGTTGTTTTTGGGGTTTTGCATAAAATCCAACATCCCATGGGTTACCACACCTTAGCACTTGCTCCTGTGTCAAGCAATCGAGCAATGGTAGAAGAAGTCTCAAAGAAAGTACATATGTATGTGAACAAGCTTCTGCCAAGTGCTCAAGAGTGTGAAGATGAAGGGGTGGACATTGAAGTTAAAGTTACTGCTGGAACTCCAATCAAGCAGGTTATTTTACAAGAGATTGTAGCTTATAAAACAACTTGGGTTATATTTGATAGGCACCTTAGACGGGATTTGAGGAACTACATTAACCAGATACCAAGCAAGGTTGCATTAATTCAAGATAACTTGTCGGTTAAGGTTCTAAGGTCTCAAACTACAAGTGGAACAGAAGTTATTGAAAATAAGTTGTTTTATTCTTTGAGTAAGCTTGTAGAGCAGTCTAATATCTCTTCCAGCAGCTTTCCAACACCAGCCAATTCCTCAGAAAGTTCCAATGTTGTTAAGAGCAACTTGATGTCTTCATTCATATACAGGTCACAGGAGCATAACTCTTCATTCTATGATGACTTTGGATCTTCCTCTAAGCAAGAAAAATCAGTTTATGTGGACGACATCGTCATTACAGGCAGTGATCAAAATGGTATTCAGAAACTAAAGCAACACCTTTTCACCCACTTTCAGACTAAAGACTTGGGAAAACTCAAGTATTTCTTAGGGATTGAGATAGCTCAATCCAGTTCCGGTGTGGTTCTTTCCCAAAGGAAGTATGCTTTAGACATCTTGGAAGAAATCGGTATGTTAGACTGTAAACCGGTAGACACTCCTATGGATCCAAATGTCAAACTTATACCAGGACAGGGGGAGCCTTTAAGAGATCCTGGGAGATATCGACGACTTGTAGGTAAACTGAACTACCTCACCATTACTCGTCCAAACATTTCTTTTTCTGTAAGTGTTGTTAGTCAATTCCTACAGTCACCATGTGATAGCCATTGGGATGCTGTAATCTGCATTTTTCGATATATCAAAAGCACACTAGGCCAAGGTGTGTTGTATGAGAACAAAGGTCATACCCAGGTTGTTGGTTACACAGATGCAGATTGGGCTGGCTCACCCATAGATAGACGTTTCACTTCCGGGTATTGTGTTTTTATTGGAGGTATATGCACTGTAGGTGAAAAGCAATATTCTGCAGATTCTGAGGTAATCCAGAAACAATTTAAGAGCATCTTCCGAAAGAGATCCTCAGAAGCACCTGTTCTTTGTGCTGCTTGTGGGATGAAGACGATATTATATATCAAGGAGTCCATGAAATTCAGTTTTTCTGAACTACAACTTGCAACAGATGATTTTTCAAAGGAGAACTTGTTAGGAGAAGGTGGATATGGTCACGTATATAAAGGTGAGCTTAAAGACGGACAGATTATTGCAGCAAAGGTACGAAAAGAAGCAAGTATGCAAGGATTTGCTGAATTCCATTCTGAAGTCTTTGTTTTGAGTTTTGCGCGCCACAAGAACATTGTGATGCTCTTGGGTTATTGTTGCAAGGAGAACTTTAATATCTTGGTGTATGAGTATATCTGCAACAAGTCTCTTGAATGGCACTTATTTGATAAAACTGCCACTGTTCTTGAGTGGCACCAAAGACGTGCTATTGCGATAGGAACTGCAAAAGGATTGCGCTTCCTACATAAAGAGTGTCGTGGAGGTCCTATAATTCATCGGGACATGCGGCCCAGCAATATCTTGCTAACACATGACTTTGTTCCTATGCTAGGTGACTTTGGCCTTGCCAAATGGAGAACAAATGATGACCCTGTTCACACAAGGGTACTTGGCACATTTGGATACCTTGCACCAGAGTATGCAGAGAATGGTATGGTTTCTGTGCGAACAGATGTCTATGCATTTGGCATGGTCCTTTTACAACTGATATCAGGGCGCAAGGTGATTGATCCAACAAGAGAAGGGCATCAACAATCTCTAAGACAGTGGGCAGAACCACTTATTGTGCGGCTTGCGTTACATGAACTTATTGATCCTCGTATTGAAGATTCGTATGACACGTATGAATTGTACCTCATGGCTAGAGCTGCATACTTATGTGTGCAAAGCAGCCCTGAAATGCGGCCCTCAATGGGGGAGGTCACACGCCTTCTTGAAGGGGAAAATGAGCATTTACACCACTTAGGGGAGCAATTTATTCCTCATTATACAAAGTTATGA 2349 0.4163 MDSPSLPSRVLIAYDATKDLGNDEIQVTIKEVRMRGDILRRGDTLVVFGVLHKIQHPMGYHTLALAPVSSNRAMVEEVSKKVHMYVNKLLPSAQECEDEGVDIEVKVTAGTPIKQVILQEIVAYKTTWVIFDRHLRRDLRNYINQIPSKVALIQDNLSVKVLRSQTTSGTEVIENKLFYSLSKLVEQSNISSSSFPTPANSSESSNVVKSNLMSSFIYRSQEHNSSFYDDFGSSSKQEKSVYVDDIVITGSDQNGIQKLKQHLFTHFQTKDLGKLKYFLGIEIAQSSSGVVLSQRKYALDILEEIGMLDCKPVDTPMDPNVKLIPGQGEPLRDPGRYRRLVGKLNYLTITRPNISFSVSVVSQFLQSPCDSHWDAVICIFRYIKSTLGQGVLYENKGHTQVVGYTDADWAGSPIDRRFTSGYCVFIGGICTVGEKQYSADSEVIQKQFKSIFRKRSSEAPVLCAACGMKTILYIKESMKFSFSELQLATDDFSKENLLGEGGYGHVYKGELKDGQIIAAKVRKEASMQGFAEFHSEVFVLSFARHKNIVMLLGYCCKENFNILVYEYICNKSLEWHLFDKTATVLEWHQRRAIAIGTAKGLRFLHKECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWRTNDDPVHTRVLGTFGYLAPEYAENGMVSVRTDVYAFGMVLLQLISGRKVIDPTREGHQQSLRQWAEPLIVRLALHELIDPRIEDSYDTYELYLMARAAYLCVQSSPEMRPSMGEVTRLLEGENEHLHHLGEQFIPHYTKL* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1297 782 Pfam Protein kinase domain 493 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1297 782 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 464 567 - -
Vvi18g1297 782 Gene3D Phosphorylase Kinase; domain 1 461 567 - -
Vvi18g1297 782 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 221 317 IPR013103 -
Vvi18g1297 782 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Vvi18g1297 782 SUPERFAMILY Protein kinase-like (PK-like) 476 763 IPR011009 -
Vvi18g1297 782 PANTHER OS01G0750732 PROTEIN 471 767 - -
Vvi18g1297 782 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 569 770 - -
Vvi18g1297 782 CDD STKc_IRAK 498 763 - -
Vvi18g1297 782 ProSiteProfiles Protein kinase domain profile. 492 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1297 782 ProSitePatterns Tyrosine protein kinases specific active-site signature. 613 625 IPR008266 GO:0004672|GO:0006468
Vvi18g1297 782 Gene3D Transferase(Phosphotransferase) domain 1 569 774 - -
Vvi18g1297 782 SUPERFAMILY DNA/RNA polymerases 239 427 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1297 Vvi-Chr18 12997586 13013251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1297 480 766 Trihelix Transcription Factor Family AT1G70460 46.233 1.92e-77 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vvi18g1297 Pkinase 1.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1297 - - vvi:100247151 717.227