Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1289 ATGGCATCCAAGTTTCCCCAAAATGGCACAAGCTCAAAGAAAGGGGTAAACCCACATCTCAAGCCCCTGTTCTTTCTTTCCATACATAGATATATGGCTCAGACAACCCCGAATCACACACAGACTGTTTCTGGGTGGGCAGCTCATGATTCCTCCGGCAAGATCACCCCGTACGTCTTCAAGAGAAGAGAAAACGGCCCCAATGATGTTACCATTGAAATCTTGTACTGTGGGATATGCCACACTGATCTCCACCATGTCCGGAATGACTGGGGCATCACCATGTATCCGGTTGTCCCCGGGCATGAAATTACTGGGGTTGTCACCAAGGTAGGAACCAACGTGACAAGGTTCAAAACAGGGGACAGGGTAGGAGTAGGATGCTTGGCGGCATCATGTTTGGAGTGTGAGTTCTGCAAGAGCTCTCAGGAGAACTACTGTGATCAGATTCAGTTTACCTACAATGGTATTTTCTGGGATGGTAGCATCACCTATGGTGGATACTCCAGAATGTTGGTTGCAGATCAGAGGTATGTGGTTCGGGTGCCGGAGAATTTGCCAATGGATGCAGTGGCTCCAATGTTATGTGCGGGAATAACAGTGTACAGCCCCATGAAAGACACCAAGATGCTAGAGTCACCGGGGAAGAAGCTAGGAATAATCGGTTTGGGAGGACTAGGTCATGTTGCAGTTAAATTTGCAAAGGCTTTTGGCCTCCATGTGACCATCATCAGCACCTCTCCCTCAAAAGAGAAAGAGGCGAAAGAGCGCCTGGGTGCAGACCATTTCATAGTTAGCACCAACCCCAAACAAATGCAGGCAGGGAAGAGGAGCCTGGACTTCATACTGGACACAGTGTCTGCGAACCACTCCCTGGGGCACTACTTGGAACTGCTGAAGGTGAACGGGACAATGGTGATCGTGGGCGCACCAGAGAAGCCCATGGAGCTGCCGTCTTTCCCTCTGATATTCGGGAAGAGAACGGTGAAGGGAAGCATGACAGGAGGGATGAACGAGACGCAGGAGATGATGGATGTGTGTGGAAAGCACAACATCACATGTGATATTGAGGTGGTGAAACCAGACCAGATTAATGAAGCCCTCGAGCGCCTTGCAAACAATGATGTTCGGTATCGTTTCGTCATCGATATTGCTGGCCAGTCTCCAAATCTTTAG 1176 0.4957 MASKFPQNGTSSKKGVNPHLKPLFFLSIHRYMAQTTPNHTQTVSGWAAHDSSGKITPYVFKRRENGPNDVTIEILYCGICHTDLHHVRNDWGITMYPVVPGHEITGVVTKVGTNVTRFKTGDRVGVGCLAASCLECEFCKSSQENYCDQIQFTYNGIFWDGSITYGGYSRMLVADQRYVVRVPENLPMDAVAPMLCAGITVYSPMKDTKMLESPGKKLGIIGLGGLGHVAVKFAKAFGLHVTIISTSPSKEKEAKERLGADHFIVSTNPKQMQAGKRSLDFILDTVSANHSLGHYLELLKVNGTMVIVGAPEKPMELPSFPLIFGKRTVKGSMTGGMNETQEMMDVCGKHNITCDIEVVKPDQINEALERLANNDVRYRFVIDIAGQSPNL* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1289 391 FunFam Cinnamyl alcohol dehydrogenase 197 354 - -
Vvi18g1289 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 186 352 IPR036291 -
Vvi18g1289 391 FunFam Putative cinnamyl alcohol dehydrogenase 6 355 384 - -
Vvi18g1289 391 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 101 115 IPR002328 GO:0008270|GO:0016491
Vvi18g1289 391 Pfam Zinc-binding dehydrogenase 225 346 IPR013149 -
Vvi18g1289 391 Gene3D - 197 354 - -
Vvi18g1289 391 FunFam probable cinnamyl alcohol dehydrogenase 46 210 - -
Vvi18g1289 391 Pfam Alcohol dehydrogenase GroES-like domain 67 182 IPR013154 -
Vvi18g1289 391 SUPERFAMILY GroES-like 49 212 IPR011032 -
Vvi18g1289 391 Gene3D - 46 384 - -
Vvi18g1289 391 PANTHER ALDEHYDE REDUCTASE 38 386 IPR047109 GO:0016616
Vvi18g1289 391 CDD CAD1 45 383 IPR047109 GO:0016616
Vvi18g1289 391 SMART PKS_ER_names_mod 50 382 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1289 Vvi-Chr18 12954334 12956270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1289 45 385 Monolignol Biosynthesis Gene Families AT2G21730 57.310 3.06e-143 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1289 K00083 - vvi:100262607 787.334