Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1287 ATGCACAGTACAAAACCAGAGGGCACCCAGACTTTTCTCTCCATCCCAGTTTTTCTATTCTCTTCCCTCATATGTTCATTCACCCTCCCCTCCCTTCCACTTTCTCTCTCAATGTTCACCATGTGGTCATCGTTAGTTGACGACGACGACAACGGCAGCAGCAAGAGGGTGTCTTGCTCACCCTCAAAGTCCTCCACATGTTCATCTCATCCTCCTTTCTCACCCTCATCTCCCATCCCTGACTCTTCACCCAAAAAAACCATGGACGAAGTCTGGAAAGATTTGAGCCTCTCTTCTCTTCATCACCACTCCATCAGCACCGTCAACAATGCTACCACCAACACCCACCATGCATTTCGTAGCACCCTCCTTCAGGACTTCTTGGCTCGACCTTCCAATATGGACCCACTTAGAACAGGCACCTCTACTGCTGATCCCTCCTCCGCCGGAGCTGCCACTCCCTTCGCATCTCCCCTTCCTCCTCCGCCCACCCTCTTGAGCTTGAATTCACTCCCTGATTTTCATTGCATTGACGACACTGATCCCATGAAGCCGCACTCTCATTTGCACAATAACGCCACTGCTGCTACGCCCTATCTGTACCCTCCCTTCAATGTTTTGGCTGCTGCTTCTCCCGAATACCCTTCATTCCGCAAGAAAAGGCCCCGAGGAAGTGACGATAATTCTGGCGATCGGCGACATAAACGCCTCATCAAGAACAGAGAGTCAGCTGCACGCTCCAGGGCTAGAAAACAGGCTTACACAAACGAGTTGGAGCTGGAAGTTGCCCACTTGATAGAGGAGAATGCAAGGCTGAAAAGACTGCAACAAAAGTTCTGCCCAGAAGCTTCTGCTCAGCTTCCAAAAAAGCACACACTCTACAGAACCTCAACTGCCCCATTTTGA 906 0.5066 MHSTKPEGTQTFLSIPVFLFSSLICSFTLPSLPLSLSMFTMWSSLVDDDDNGSSKRVSCSPSKSSTCSSHPPFSPSSPIPDSSPKKTMDEVWKDLSLSSLHHHSISTVNNATTNTHHAFRSTLLQDFLARPSNMDPLRTGTSTADPSSAGAATPFASPLPPPPTLLSLNSLPDFHCIDDTDPMKPHSHLHNNATAATPYLYPPFNVLAAASPEYPSFRKKRPRGSDDNSGDRRHKRLIKNRESAARSRARKQAYTNELELEVAHLIEENARLKRLQQKFCPEASAQLPKKHTLYRTSTAPF* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1287 301 SMART brlzneu 228 289 IPR004827 GO:0003700|GO:0006355
Vvi18g1287 301 CDD bZIP_plant_BZIP46 232 286 - -
Vvi18g1287 301 MobiDBLite consensus disorder prediction 216 251 - -
Vvi18g1287 301 SUPERFAMILY Leucine zipper domain 232 277 IPR046347 GO:0003700|GO:0006355
Vvi18g1287 301 Coils Coil 255 275 - -
Vvi18g1287 301 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 230 287 - -
Vvi18g1287 301 Pfam bZIP transcription factor 232 274 IPR004827 GO:0003700|GO:0006355
Vvi18g1287 301 MobiDBLite consensus disorder prediction 131 161 - -
Vvi18g1287 301 MobiDBLite consensus disorder prediction 135 150 - -
Vvi18g1287 301 MobiDBLite consensus disorder prediction 55 72 - -
Vvi18g1287 301 Gene3D - 231 281 - -
Vvi18g1287 301 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 230 274 IPR004827 GO:0003700|GO:0006355
Vvi18g1287 301 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 235 250 IPR004827 GO:0003700|GO:0006355
Vvi18g1287 301 MobiDBLite consensus disorder prediction 53 87 - -
Vvi18g1287 301 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 73 300 IPR043452 GO:0003700|GO:0045893
Vvi18g1287 301 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1287 Vvi-Chr18 12936974 12938164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1287 87 252 bZIP Transcription Factor Family AT4G35900 40.782 2.19e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi18g1287 bZIP_1 3.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1287 K14432 - vvi:100266063 501.13