Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1281 ATGAACACTACACCACCTACATCAACACCCAACCATGCCATATTCCTACCGAGGAACGAAACATTTCCAGCCGTGCTAGTTTTCGGAGATTCGATAGTGGATCCGGGCAATAACAACAATCTTAGTACTGTGGTTAAGTGCAATTTTCCACCGTATGGGAGGGACTTCGTGGGAGGATTTCCAACTGGAAGATTTAGCAATGGCAAAATTCCGCCTGACTTCATTGCTGAAGAATTGGGAATCAAAAATCTACTGCCACCATATTCTAGCCCGTCTCTTCAACTTGGTGATCTCCTGACTGGAGTGAGCTTCGCCTCAAGTGGCTCAGGATTTGATCCTCTAACACCTAAGCTTGTGTCAGTTTTATCTCTGCGGGATCAATTAGGAATGTTCAAAGAATACATAGGAAAGTTGAAAGTGATGGTTGGAGAAGAGAGAACAAACACCATTTTAAGCAAAAGCTTATTTCTAGTAGTAGCAGGCAGTGATGACATTGCCAATTCATACTTTGTCATCGGCGTTCGGAAACGCCAGTATGATGTTCCGGCTTACACTGATTTTATGGCCACCTCGGCTGCTTCTTTCTTGAAGGAATTGTATGGATTGGGGGCACGAAGAATAGGTGTTGCCAGTGCACCTCCATTGGGGTGTCTGCCATCACAGAGAAGCTTAGCAGGAGGGAAACAAAGAGAGTGTGCTGAGGATCACAACGAAGCTGCGAAGCTGTTCAACACCAAGCTCTCGTCTCAATTGGATTCTCTCAACGCCAATTCTCCCCAGGCAAAGTTTGTCTACATTGATATTTACAAACCCTTTCTCGATCTCATCCAAAACCCTCAAAAATCAGGGTTTGAAGTGGTGGATAAAGGTTGTTGTGGCACAGGGAGAATAGAGGCGGCAGCACTATGTAGCCTATTAAGTTCATTTACTTGTGAAGACGCGTCAAATTATGTATTTTGGGATAGTTATCATCCTACAGAAAGAGCATACAAGGTTATAATAGAGAAGATCATCCAGAAATGCGTGGACGGCTTCTTCTGA 1041 0.4419 MNTTPPTSTPNHAIFLPRNETFPAVLVFGDSIVDPGNNNNLSTVVKCNFPPYGRDFVGGFPTGRFSNGKIPPDFIAEELGIKNLLPPYSSPSLQLGDLLTGVSFASSGSGFDPLTPKLVSVLSLRDQLGMFKEYIGKLKVMVGEERTNTILSKSLFLVVAGSDDIANSYFVIGVRKRQYDVPAYTDFMATSAASFLKELYGLGARRIGVASAPPLGCLPSQRSLAGGKQRECAEDHNEAAKLFNTKLSSQLDSLNANSPQAKFVYIDIYKPFLDLIQNPQKSGFEVVDKGCCGTGRIEAAALCSLLSSFTCEDASNYVFWDSYHPTERAYKVIIEKIIQKCVDGFF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1281 346 FunFam GDSL esterase/lipase APG 15 342 - -
Vvi18g1281 346 Pfam GDSL-like Lipase/Acylhydrolase 25 337 IPR001087 GO:0016788
Vvi18g1281 346 SUPERFAMILY SGNH hydrolase 25 339 - -
Vvi18g1281 346 CDD SGNH_plant_lipase_like 23 340 IPR035669 -
Vvi18g1281 346 PANTHER GDSL ESTERASE/LIPASE EXL3 22 337 - -
Vvi18g1281 346 Gene3D SGNH hydrolase 14 342 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1281 Vvi-Chr18 12863066 12871404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1281 19 345 Pollen Coat Proteome AT1G75910 42.121 2.05e-78 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1281 - - vvi:100242089 664.455