Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1280 ATGGTGTTTCTTTCTATGGAACTGTGGTCGTCTTCTTCGATTATTGTTTTCTTTCTTTCTGTTTTTATTATTTTATGTACCACAGAAGCTCTCGTAAAGCTACCGAGGAACGAAACAGTTCCAGCAGTGCTAGTTTTCGGAGATTCGATAGTGGATCCGGGCAATAACAACAATCTTAATACTCTGGTTAAGTCCAATTTTCCACCGTATGGGAGGGACTTAATGGGAGGAGTTCCAACTGGAAGATTTAGCAATGGAAAAATTCCGTCTGACTTCATTGCCGAAGCATTGGGAATCAAAGAGCTAGTGCCACCATATTCTAACGCGGCTCTTCAACTTGGTGATCTCCTGACCGGAGTGAGCTTCGCCTCAAGTGGCTCAGGATTTGATCCTATGACACCTAAGCTTGCGTCAGTTTTATCTCTGCGGGATCAATTAGAAATGTTCAAAGAATACATAAGAAAGTTGAAAAGGATGGTTGGAGTAGAAAGAACAAACACCATTTTAAGCAAAAGCCTATTTCTAGTGGTAGCAGGCAGTGATGACATTGCCAATTCATACTTTGATAGCCGTGTTCAGAAATTCCAGTATGATGTTCCGGCTTACACTGATCTTATGGTCACCTCGGCTGCTTCTTTCTTGAAGGAATTGTATGGATTGGGGGCACGCAGAACAGTTGTTACTAGTGCACCTCCATTGGGGTGTCTGCCATCACAGAGAAGCTTAGCAGGAGGGACACAAAGAGAGTGTGCTGAGGGTCACAACGAAGCAGCGAAGCTGTTTAATTTTAAGCTCTCATCTCGATTGGATTCTCTCAACGCCAATTTTCCCCAGGCAAAGTTTGTCTACGTTGATATTTACAAACCCTTACTTGATCTCATCCAAAACCCTCAAAAATCAGGGTTTGAAGTGGTGGATAAAGGTTGCTGTGGCTCAGGGACAATAGAGGTGGCAGTGCTATGTAACCAATTAAGTCCATTCACTTGCGAAGACGCGTCAACTTATGTATTTTGGGACAGTTATCATCCTACAGAAAGAGCATACAAGGTTATAATTGATGAGATCATCCAGAAATGCGTGGACAGCTTGATCTGA 1095 0.4283 MVFLSMELWSSSSIIVFFLSVFIILCTTEALVKLPRNETVPAVLVFGDSIVDPGNNNNLNTLVKSNFPPYGRDLMGGVPTGRFSNGKIPSDFIAEALGIKELVPPYSNAALQLGDLLTGVSFASSGSGFDPMTPKLASVLSLRDQLEMFKEYIRKLKRMVGVERTNTILSKSLFLVVAGSDDIANSYFDSRVQKFQYDVPAYTDLMVTSAASFLKELYGLGARRTVVTSAPPLGCLPSQRSLAGGTQRECAEGHNEAAKLFNFKLSSRLDSLNANFPQAKFVYVDIYKPLLDLIQNPQKSGFEVVDKGCCGSGTIEVAVLCNQLSPFTCEDASTYVFWDSYHPTERAYKVIIDEIIQKCVDSLI* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1280 364 Gene3D SGNH hydrolase 31 360 IPR036514 -
Vvi18g1280 364 CDD SGNH_plant_lipase_like 41 358 IPR035669 -
Vvi18g1280 364 PANTHER GDSL ESTERASE/LIPASE EXL3 20 355 - -
Vvi18g1280 364 SUPERFAMILY SGNH hydrolase 43 357 - -
Vvi18g1280 364 Pfam GDSL-like Lipase/Acylhydrolase 43 354 IPR001087 GO:0016788
Vvi18g1280 364 FunFam GDSL esterase/lipase APG 32 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1280 Vvi-Chr18 12859184 12861492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1280 14 363 Pollen Coat Proteome AT1G75910 41.360 6.63e-81 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1280 - - vvi:100264374 690.263