Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1279 ATGTTACAAATTTGTTTTAAAATATTAGGTTCCAAACCCAAGGAGCGGATGAAAATGCTTTCTTCTTCTCCTTCTTCTTCCACTATTCCACTCTTTGTTTCCGTTTTTATTATTTTATGCAGCACAGAAGCCCTGGTAAAGCTACCAGATAATGAAACAGTTCCAGCTCTGATAGTTTTCGGAGATTCGATAGTGGACCCTGGCAATAACAACGATCTTGTTAGCGTGGCTAAGTGCAATTTTCCACCCTATGGGAGGGACTTCATTGGGGGAATTCCGACCGGAAGATTTAGCAATGGCAAAATTCCTTCCGACTTCATTGAACAGTTCAAAGAGTATATAGGAAAGTTGACAGCCATGGTTGGAGAACAAAGAACAAACACCATTTTAAGCAAAAGCCTATTTTTAGTGGTACAAAGCAGTAACGACATTGCCACTACATATTTCGACATACGGAAAGTGCAGTATGATTTTGCTTCTTATGCAGATCTTCTGGTAACCTGGGCTTCTTCTTTCTTTAAGGAATTGTATGGATTGGGGGCACGAAGAATAGCTGTTTTCAGTGCACCTCCGTTAGGATGCCTGCCATCACAGAGAAGCTTAGCAGCAGGGATAGAAAGAGAGTGTGTAGAGAAGTACAACGAAGCATCCAAGTTATTCAACACTAAGCTCTCATCTGGATTGGATTCTCTCAACACCAACTTTCCCCTTGCAAAGTTTGTGTATGTTGATATTTATAACCCCTTGCTTGATATCATCCAAAACCCTCAAAAATCAGGATTTGAAGTAGTGAATAAAGGATGCTGTGGCACGGGGCTAATAGAGGTAGCAGTGCTATGTAACCAATTTAATCCGTTTACTTGTAATGATGTTACCAACACAGAAGCCCTGATAAAGCTACCAGATAATGAAACAGTTCCAGCTTTGCTTGTTTTCGGAGATTCGATAGTGGACCCTGGCAATAACAACGATCTTGTTACCTTTGCTAAGGGCAATTTTCCGCCCTATGGGAGGGACTTCATTGGCGGAATTCCAACGGGAAGATTTAGCAATGGCAAAATTCCTGCCGACTTCATTGCCGAAGAATTGGGAATCAAAGAGATAGTGCCGGCATACTTAGACCCAACTCTTCAACCTAGTGATATCCTCACTGGAGTAAGCTTCGCTTCCGGCGCTTCAGGATATGACCCTCTAACATCTAAGATTCCGGCAGTTTATTCACTGTCGGATCAATTAGAAATGTTCAAGGAGTACACAGGAAAGCTGAAAGCCATGGTTGGAGAAGAGAGAACAAACACCATTCTAAGCAAAAGCTTGTTTTTAGTGGTACAAAGCAGTAATGACATTGCCTCTACATATTTCACCGTTCGGAGAGTGCAGTATGATTTTTCTTCTTACGCAGATCTTCTGGTAACCTGGGCTTCTTCTTTCTTTAAGGAATTGTATGGATTGGGGGCACGAAGAATAGCTGTTTTCGGTGCACCTCCGTTAGGGTGCCTGCCATCACAGAAAAGCATAGCAGGAGGGATAGAAAGAGAGTGTGTAGAGAATTACAATGAAGCATGCAAGTTATTCAACACTAAGCTCTCATCTGGATTGGATTCTCTCAACACCAACTTTCCCCTTGCAAAGTTTGTGTATATTGATATTTATAACCCCTTGCTTGATATCATCCAAAACCCTCAAAAATCAGGATTTGAAGTAGCGAATAAAGGATGCTGTGGCACGGGGTTAATAGAGGTTGCATTGCTATGTAACCGATTGAATCCGTTTACTTGTAATGATGTGACCAAGTATGTATTTTGGGACAGTTATCATCCTACAGAACGAGTGTACAAGATTCTAATAGGTAGGATCATCCAGGAATACGTGGGCAGCTTCCTCTGA 1887 0.4171 MLQICFKILGSKPKERMKMLSSSPSSSTIPLFVSVFIILCSTEALVKLPDNETVPALIVFGDSIVDPGNNNDLVSVAKCNFPPYGRDFIGGIPTGRFSNGKIPSDFIEQFKEYIGKLTAMVGEQRTNTILSKSLFLVVQSSNDIATTYFDIRKVQYDFASYADLLVTWASSFFKELYGLGARRIAVFSAPPLGCLPSQRSLAAGIERECVEKYNEASKLFNTKLSSGLDSLNTNFPLAKFVYVDIYNPLLDIIQNPQKSGFEVVNKGCCGTGLIEVAVLCNQFNPFTCNDVTNTEALIKLPDNETVPALLVFGDSIVDPGNNNDLVTFAKGNFPPYGRDFIGGIPTGRFSNGKIPADFIAEELGIKEIVPAYLDPTLQPSDILTGVSFASGASGYDPLTSKIPAVYSLSDQLEMFKEYTGKLKAMVGEERTNTILSKSLFLVVQSSNDIASTYFTVRRVQYDFSSYADLLVTWASSFFKELYGLGARRIAVFGAPPLGCLPSQKSIAGGIERECVENYNEACKLFNTKLSSGLDSLNTNFPLAKFVYIDIYNPLLDIIQNPQKSGFEVANKGCCGTGLIEVALLCNRLNPFTCNDVTKYVFWDSYHPTERVYKILIGRIIQEYVGSFL* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1279 628 PANTHER GDSL ESTERASE/LIPASE EXL3 38 108 - -
Vvi18g1279 628 FunFam GDSL esterase/lipase APG 298 624 - -
Vvi18g1279 628 FunFam GDSL esterase/lipase APG 107 294 - -
Vvi18g1279 628 CDD SGNH_plant_lipase_like 55 293 IPR035669 -
Vvi18g1279 628 CDD SGNH_plant_lipase_like 307 623 IPR035669 -
Vvi18g1279 628 Gene3D SGNH hydrolase 45 297 IPR036514 -
Vvi18g1279 628 Gene3D SGNH hydrolase 298 624 IPR036514 -
Vvi18g1279 628 Pfam GDSL-like Lipase/Acylhydrolase 58 273 IPR001087 GO:0016788
Vvi18g1279 628 Pfam GDSL-like Lipase/Acylhydrolase 309 615 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1279 Vvi-Chr18 12823491 12840392 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1279 303 622 Pollen Coat Proteome AT1G75910 43.385 1.32e-80 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1279 - - cit:102615308 717.998