Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1278 ATGCTTTCATCTTCTTCTTCCACTATTCCACTCCTTGTTTTCGTTTTTATTTCTTTATGCAGCACAGAAGCCCTGGTAAAGCTACCGGACAATGAAAAAGTTCCAGCAGTGATAGTTTTCGGAGATTCGATCGTGGACCCTGGCAATAACAACAATCTTGTTACTGTGGCTAAGTGCAATTTTCCACCCTATGGGCGGGACTTCATTGGCGGAATTCCAACCGGAAGATTTAGCAATGGCAAAATTCCTTCCGACTTCATTGCCGAAGAATTGGGAATCAAAAAGTTACTGCCGGCATACTTAGACCCAACTCTTCAACCTAGTGATCTCCTCACTGGAGTAAGCTTCGCTTCAGGCGCTTCAGGATATGACCCTCTAACACCTAAGATTCCGTCAGTTTTTTCACTGTCGGATCAACTAGAAATGTTCAAAGAGTACATAGGAAAGCTGAAAGGCATGGTTGGAGAAGAAAGAACAAACACCATTCTAAGCAAAAGCCTATTTTTCGTGGTACAAGGCAGTAATGACATTACCTCTACATATTTCAACATACGCAGAGGGCAGTATGATTTTGCTTCTTATGCAGATCTTCTGGTAATCTGGGCTTCTTCTTTCTTTAAGCAAATTTTAAAGGAATTGTATGGATTGGGGGCACGAAGAATAGGTGTTTTCAGTGCACCTCCGTTAGGGTGCCTGCCATCACAGAGAAGCTTAGCAGGAGGGATACAAAGAGAGTGTGTAGAGAAGTACAACGAAGCATCCCAGTTATTCAACACTAAGCTCTCATCTGGATTGGATTCTCTCAACACCAACTTTCCCCTTGCAAAGTTTGTGTATGTTGATATCTACAACCCCTTGCTTGATATCATCCAAAACCCTCAAAAATCAGGATTTGAAGTAGTGAATAAAGGATGCTGTGGCACGGGGTTAATAGAGGTTTCAGTGCTATGTGACCAATTGAATCCGTTTACTTGCAATGATGCGACCAAGTATGTATTTTGGGACAGCTATCATCCTACAGAACGAGCGTACAAGACTATAATTGGTGAGATCTTCCAGGGATATGTGGATAGCTTCTTCTGA 1083 0.4229 MLSSSSSTIPLLVFVFISLCSTEALVKLPDNEKVPAVIVFGDSIVDPGNNNNLVTVAKCNFPPYGRDFIGGIPTGRFSNGKIPSDFIAEELGIKKLLPAYLDPTLQPSDLLTGVSFASGASGYDPLTPKIPSVFSLSDQLEMFKEYIGKLKGMVGEERTNTILSKSLFFVVQGSNDITSTYFNIRRGQYDFASYADLLVIWASSFFKQILKELYGLGARRIGVFSAPPLGCLPSQRSLAGGIQRECVEKYNEASQLFNTKLSSGLDSLNTNFPLAKFVYVDIYNPLLDIIQNPQKSGFEVVNKGCCGTGLIEVSVLCDQLNPFTCNDATKYVFWDSYHPTERAYKTIIGEIFQGYVDSFF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1278 360 CDD SGNH_plant_lipase_like 35 355 IPR035669 -
Vvi18g1278 360 Gene3D SGNH hydrolase 24 355 IPR036514 -
Vvi18g1278 360 Pfam GDSL-like Lipase/Acylhydrolase 37 347 IPR001087 GO:0016788
Vvi18g1278 360 PANTHER GDSL ESTERASE/LIPASE EXL3 16 350 - -
Vvi18g1278 360 FunFam GDSL esterase/lipase APG 26 356 - -
Vvi18g1278 360 SUPERFAMILY SGNH hydrolase 161 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1278 Vvi-Chr18 12821158 12822813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1278 7 353 Pollen Coat Proteome AT1G75910 42.776 2.92e-81 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1278 - - vvi:100257502 713.761