Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1271 ATGTCTATCATTAACAAGGGAAATGCAGAGAAGAGAAAAGAGAAGAAGAGGCAAGTGCTTTATAGGATAGCCATGAAGAACCCTTATGCAGAAATGCTCAGTTGTGATTTCATTGAAGTTGCCAAGCTGAAACACGGCCTAGTTGCAATCCAAGTTTGCCCAGATTCTGATCCTGTTTGGAAAGAGATGCCTTCAAATTGTAGAGACGTGTGTAAATCAGAGCAGGTAAATTTTTTAAGTCCAATATGTGAAGCAAATTCAGGAGGAAAGGCTTTGAAGCGGGTGTCAAAGCATTCTTCCAAACGAGTTCCTGGGACTACTGCTGTTTTATCCATAGCCCGGAAGAAGATTACCTCCAGAAGACGTTTACGCTGTCATTCGGCAGGTCCTGAATTAGAGTTGAAGTCAATTCTCTATCCTAAAGAAAATAAAACTGGATTCAGAGATGTTGAAAGAACTAGTAATTCTGAAAGTGCATCGGTTGGTGGTGGGGGTGGAGCCTTGGAAGATGGCTTTGTCAGCCTTGTCCATGAACACGGGGAAGCTCCTTTGAGCACATCATCTCTTTGCTTAAAAGAGCTGCAAGAATCTACTCCTGGTTGGCCCCTCCTCCGAACAGCTGTTCCGGTGAGTGAGGAAGCTTTGAGTAAATCAGAAGCAAGAGAATTGTCTGTGGTCCAGTGGGTGATGAGTCTGCCTAACCGGTCATGCCCTGTAATTATGCGAACTCAGAATGAAGAAAATGATAATTCTATAGTTCATGATGAATGGGAGATCGAAACAACAAGTGTCCAAGTTGTTCAAACCTCTGAAGGCAAATCATTATATGGCAATCAGAAAGATGAGAATCTTAGCCTTCAAGCTATTCAAGCTTCTGAAGACAAATCAATGGATGGCAGTGAGAACACAGAAAATGAGGATTTTGGCCACGCTAGTGAATACAAGGGGCAAGTTTGCCTGCAACAATCAATGCTAGGTTGGCCTCTTCTCCAGAAAACAGCTTCTGCAACTCCAGAAGCCTTCAGAGAATCCAAATTAGCTAATAAATTGAGTGTGGTTCAATGGGCAATGAAACTGCCAGATCGAAACCAAATTGGCTTGGGTTCAAACACAATAGAAAGTACTCCTCTTGAAAGAGAAACCAATGATTCTGAAGTTAATGAAAACAACATTAATTCTCCGGCAGTATCAGCAAAGCTACCCAAGGAGTTGGATCTTCACAAAACAAACTCATCTGGTTGCAGATGGTTCAGCTATGAGGAGCTAAAGAGGGCAACTTCTCAATTCTCCTCAGAAAACCTCATAGGAGAGGGAGGTTGCAGCAGTGTATACAAGGGGCATCTTCCCTGCGGCCAGCCAGTGGCAGTAAAGATTTCAAAATCATACAAGGAAGCATGGAACAATTTTTCCCAGGAAATCAACATCACCACTTCGTTAAATCACAAGTACATCGCACCCCTCATTGGCATATGTGTTGAAGACAGCCATCTTATATCGGTCTATGACTTTGTACCCAAAGGAAGTTTAGAGGAAAACCTACATGGTGATCGGGTATTGCCATGGGAAGTGAGGTTCAAAGTGGCTGTTGTGGTTGCTGAAGCCCTGAATTATCTGCATGATGAATGTTCTCCGCCTGTGATTCACAGAGACATAAAATCATCAAACATTCTTCTCTCAGATGACTTTCAACCACAGCTATCTGATTTTGGGCTAGCCATAATGGGACCTACAGATTCAACTGAAATATTAGACAGTGATGTAGTAGGGACATTTGGGTATATTTCTCCGGAGTATTTCATGCATGGAAGGGTCAGTGATAAAATTGATATATATTCTTTTGGGGTGGTTCTTCTTGAGCTGTTATCTGGAAGAAGGCCAATTAATTCCAAGACCCTCACAGAAGAAGCAAGTTTGGTCAAGTGGGCAAAACCGATACTGGAGAGCGGGGACCTAGAGGCCTTGGTGGATCCAAATTTGGATGGGAAATTTGACAGTGTTCAAATGCATAGAGTAGTTCTAGCAGCAACCTCCTGTATCAATGAGTCAGCTGAACTCCGTCCTAAAGGCAGCCAGATACTCAAGCTATTACGAGGGGAGAAGGACGGGGAAGAATGGTTCAAGATGCATGTTAAAGAATTGAAGGAGCGAGGGAAGAGGGAGGATGATGAATTTGATCTGCAACTTATTTCCAAGCCATTGCTTGATGTGGAGGATTATATTACATCACATAATTGTGCAGCAGAACAAAGGAAACATTTTACATTGGAAGAATACTTGAAAGGATGA 2286 0.4261 MSIINKGNAEKRKEKKRQVLYRIAMKNPYAEMLSCDFIEVAKLKHGLVAIQVCPDSDPVWKEMPSNCRDVCKSEQVNFLSPICEANSGGKALKRVSKHSSKRVPGTTAVLSIARKKITSRRRLRCHSAGPELELKSILYPKENKTGFRDVERTSNSESASVGGGGGALEDGFVSLVHEHGEAPLSTSSLCLKELQESTPGWPLLRTAVPVSEEALSKSEARELSVVQWVMSLPNRSCPVIMRTQNEENDNSIVHDEWEIETTSVQVVQTSEGKSLYGNQKDENLSLQAIQASEDKSMDGSENTENEDFGHASEYKGQVCLQQSMLGWPLLQKTASATPEAFRESKLANKLSVVQWAMKLPDRNQIGLGSNTIESTPLERETNDSEVNENNINSPAVSAKLPKELDLHKTNSSGCRWFSYEELKRATSQFSSENLIGEGGCSSVYKGHLPCGQPVAVKISKSYKEAWNNFSQEINITTSLNHKYIAPLIGICVEDSHLISVYDFVPKGSLEENLHGDRVLPWEVRFKVAVVVAEALNYLHDECSPPVIHRDIKSSNILLSDDFQPQLSDFGLAIMGPTDSTEILDSDVVGTFGYISPEYFMHGRVSDKIDIYSFGVVLLELLSGRRPINSKTLTEEASLVKWAKPILESGDLEALVDPNLDGKFDSVQMHRVVLAATSCINESAELRPKGSQILKLLRGEKDGEEWFKMHVKELKERGKREDDEFDLQLISKPLLDVEDYITSHNCAAEQRKHFTLEEYLKG* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1271 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Vvi18g1271 761 SMART serkin_6 429 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1271 761 PANTHER OS08G0249100 PROTEIN 257 715 IPR046958 -
Vvi18g1271 761 ProSiteProfiles Protein kinase domain profile. 429 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1271 761 Gene3D Phosphorylase Kinase; domain 1 392 503 - -
Vvi18g1271 761 SUPERFAMILY Protein kinase-like (PK-like) 408 696 IPR011009 -
Vvi18g1271 761 Gene3D Transferase(Phosphotransferase) domain 1 504 715 - -
Vvi18g1271 761 Pfam Protein kinase domain 430 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1271 761 MobiDBLite consensus disorder prediction 367 389 - -
Vvi18g1271 761 FunFam Putative receptor-like serine/threonine-protein kinase 504 712 - -
Vvi18g1271 761 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 399 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1271 Vvi-Chr18 12763512 12766685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1271 416 696 Trihelix Transcription Factor Family AT5G38560 44.291 2.27e-75 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vvi18g1271 Pkinase 5.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1271 - - vvi:100264402 1511.12