Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1268 ATGGAAGGACTAGAACTTCGCTCCATTCAGATTTCCGATCAGAGCCCACTTCCAGAGAAGGATCAGCAATCCAACTCAAGTCCAAAAGACACTGTTTCCTTCTTCGGCCTATTTGCAGCTGCTGATACATTGGACTGTTTTTTTATGTTCTTTGGTAGCATTGGGGCTTGCATCCATGGTGCTGCACTTCCTGTGTTCTTTGTTTTGTTTGGCCGAATGATTGATTCTTTGGGACGCCTATCTTCAGATCCAGATAAACTTTCCTCTCAAGTTTCCAGGCATGCTCTATACTTGGTCTATCTTGGACTTGGGGTTTTAGCATCAGCATGGATCGGTGTTGCATTTTGGATGCAAACAGGGGAAAGGCAGACGGCCCGTTTGCGACTCAAGTATCTTCAGTCAGTCTTAAGACAGGATATTAATTTCTTTGACACTGAGGCCAGGGATAAAAATATCACTTTCCACATTTCAAATGATGCAATTCTGTTGCAGGATGCAATTGGTGACAAGATAGGCCATGGTTTACGTTACCTTTCTCAATTCTTTGTTGGATTTGCAATAGGATTCACATCAGTATGGCAGCTTACACTTCTCACCGTGGCTGTTGTTCCATTGATGGCTATTGCTGGAGGAGCCTATACAGTAATCATGACCACCTTGTCAGAAAAAGGTGAGGCTGCCTATGCTGAAGCTGGGAAGGTTGCAGAAGAGGCTATTTCACAGGTTCGTACTGTATACTCATTTGTGGGAGAGGATAGAGCAGTTGAAACATATTCAAGGTCACTTCAAAAGGCCCTTAAACTGGGGAAAAAGAGTGGGTTTGCAAAGGGAATTGGTATTGGCTTTACATATGGGCTTTTGTTTTGTGCTTGGGCATTACTTCTCTGGTATGCCAGCAAACTAGTCAGGCATGGGGACACAAATGGGGGGAAAGCATTCACTACAATTCTCAACGTCATATTCAGTGGATTTGCTCTTGGTCAAGCTGCCCCTAATCTTGCTGCCATTGCCAAAGGCCGGGCTGCTGCAGCCAATATAGTAAACATGATTGAAACAGATTCTACTGCTTCTAAAAGGTTAGATAATGGAATAATGTTGCCAAAAGTAGCTGGACAGCTTGAATTTTGTGAGGTCTGTTTTGCTTATCCCTCACGACCTAGTATGGTCTTCGAAAATTTGAGCTTTTCTATTTATGCTGGGAAGACCTTTGCTGTTGTTGGGCCAAGTGGTTCAGGAAAGAGCACCATTATTTCCATGGTTCAACGTTTCTATGAGCCCACTTCAGGTAAAATACTGTTGGATGGACATGATATTAAGAATCTCCGATTAAAATGGCTGAGAGCACAGATGGGGTTGGTTAGTCAAGAACCTGCATTGTTTGCCACGACTATAGCTGGGAACATTCTGTATGGAAAAGAAGATGCTGATATGGATCAGGTCATAGAAGCTGCCAAAGCTGCAAATGCACATTCTTTTGTTCAAGGCTTACCTGATGGTTATCAAACTCAGGTAGGAGAGGGAGGAACTCAGCTTTCTGGAGGGCAGAAACAGAGAATTGCAATTGCAAGAGCAGTGCTGAGGAACCCAAAGATACTGCTGTTAGATGAGGCCACTAGTGCTCTTGATGCAGAATCGGAACTCATTGTTCAGAAGGCACTAGATAAAATCATGTTGAATCGAACAACAATCGTTGTTGCACACAGATTATCCACAATTCGAGACGTTAATAAAATCATTGTTTTGAAGAATGGTCAGGTTGTTGAAAGTGGGACTCATTTGGAATTGATTTCCCAGGGAGGGGAGTATGCAACTTTAGTGAGCTTACAAGTATCAGAACATGGTAAAAGTCCAAGTACAAAGGTTTGTCAAGACACTTCTGGGATTTCTAAAAGTTTTCCAGAATCCCCCAACAGTCAGAACCACCAACAGGAGGTTAAGTCAATTACCAAAGGAGAGCTACAGCCATATGATCAGAACATGGCCTCATCCAGCTCTCCTCCAATTCCATCACTTTGGCAACTAGTTAAACTAAACGCACCAGAGTGGCCCTTTGCTGTGCTTGGATCAGTGGGCGCAATTCTGGCTGGGATGGAAGCTCCTCTGTTTGCCCTGGGGATCACACATGTCTTGACTGCATTCTATTCTGGCAAAGATTTCCAGATTAAGCGAGAGGTTGACCACATTTCTCTCATATTTGTTGGAGCGGCCATTCTTACTATTTTCATATATCTATTGCAACACTATTTCTATACATTGATGGGCGAGCGTCTCACCACTCGCATTCGGTTATTAATGTTCTCAGCAATCCTTTCCAATGAGATAGGCTGGTTTGATTTGGATGAGAACAGTACTGGCTCTTTGACATCAAAATTAGCAGCAGATGCGACATTAGTAAGAAGCGCACTTGCCGACCGCCTCTCAACCATTGTGCAGAATGTTGCACTCACTGTGACAGCATTTGTTATTGCCTTCACATTAAGTTGGCGTATAGCATCTGTTATCATTGCCTCCTTCCCTCTTCTAATTGGAGCTTCCATAACTGAGCAACTATTTCTGAAGGGTTTTGGAGGAGACTACACACGGGCCTACGCTCAAGCAACTGCTGTGGCACGAGAAGCAATTGCCAATATTCGTACCGTTGCTGCATTTGGTGCTGAAGACCGAATCTCACTCCAGTTTGCTTCTGAACTGAACCAACCAAACAAACAAGCACTTTTACGTGGCCATATATCAGGTTTTGGATATGGTGTATCACAGCTCTTTGCATTCTGTTCCTATGCACTTGGCCTTTGGTATGCATCAGTTCTTATCAAACACAATGACTCGAACTTTGGAGACATCATCAAGTCCTTCATGGTTTTGATAATCACCGCATTTTCAGTAGCAGAGACACTTGCTCTAACACCTGACATTGTAAAGGGATCACAAGCACTTGGATCAGTCTTCAGTATTCTCCAAAGAAAAACAGCCATTAACCGTGACAATCCTACATCTTCAGTGGTAACTGATATCCAGGGAGACATAGAGTTCAGGAATGTGAGTTTCAGATACCCCGCAAGGCCTGATCTCATCATCTTCAAGGACTTAAATTTGAAAATCTCAGCAGGAAAGAGTCTTGCAATAGTGGGCCAAAGTGGGTCAGGGAAGAGTACTGTGATCTCACTGGTTATGAGATTTTACGACCCAACTTCAGGGGCAGTCATGATTGATGGATTTGATATCAAAGGCTTAAACTTAAGATCGTTGAGGATGAAAATAGGTTTAGTTCAGCAAGAACCAGCATTGTTCTCTACCACAATTTACGAGAACATCAGGTATGGGAATGAAGAGGCATCGGAAATTGAGATAATGAAAGCAGCCAGGGCAGCAAATGCTCACAGCTTCATCAGCAGAATGCCTGAAGGGTACCAAACTCAAGTGGGTGACAGAGGAGTTCAGTTATCAGGGGGACAGAAGCAGAGGGTGGCCATAGCTAGAGCAATATTGAAAGACCCATCCATTCTCCTTTTAGATGAAGCAACAAGTGCCCTGGACACAGCATCCGAAAAGCTGGTTCAAGAGGCTCTTGATACACTAATGGAAGGCCGAACAACAATTTTGATAGCACACAGGTTGTCAACTATACACAATGCAGACAGCATTGCGGTACTGCAACATGGTAAGGTAGTTGAAACCGGAGACCACCGGCAGCTCATCACCCGGCCTGGCAGCATCTATAAGCAGTTAGTTAGCCTACAACAGGAAAAAGGTGAAGTTCCCAATTGA 3765 0.4375 MEGLELRSIQISDQSPLPEKDQQSNSSPKDTVSFFGLFAAADTLDCFFMFFGSIGACIHGAALPVFFVLFGRMIDSLGRLSSDPDKLSSQVSRHALYLVYLGLGVLASAWIGVAFWMQTGERQTARLRLKYLQSVLRQDINFFDTEARDKNITFHISNDAILLQDAIGDKIGHGLRYLSQFFVGFAIGFTSVWQLTLLTVAVVPLMAIAGGAYTVIMTTLSEKGEAAYAEAGKVAEEAISQVRTVYSFVGEDRAVETYSRSLQKALKLGKKSGFAKGIGIGFTYGLLFCAWALLLWYASKLVRHGDTNGGKAFTTILNVIFSGFALGQAAPNLAAIAKGRAAAANIVNMIETDSTASKRLDNGIMLPKVAGQLEFCEVCFAYPSRPSMVFENLSFSIYAGKTFAVVGPSGSGKSTIISMVQRFYEPTSGKILLDGHDIKNLRLKWLRAQMGLVSQEPALFATTIAGNILYGKEDADMDQVIEAAKAANAHSFVQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQKALDKIMLNRTTIVVAHRLSTIRDVNKIIVLKNGQVVESGTHLELISQGGEYATLVSLQVSEHGKSPSTKVCQDTSGISKSFPESPNSQNHQQEVKSITKGELQPYDQNMASSSSPPIPSLWQLVKLNAPEWPFAVLGSVGAILAGMEAPLFALGITHVLTAFYSGKDFQIKREVDHISLIFVGAAILTIFIYLLQHYFYTLMGERLTTRIRLLMFSAILSNEIGWFDLDENSTGSLTSKLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWRIASVIIASFPLLIGASITEQLFLKGFGGDYTRAYAQATAVAREAIANIRTVAAFGAEDRISLQFASELNQPNKQALLRGHISGFGYGVSQLFAFCSYALGLWYASVLIKHNDSNFGDIIKSFMVLIITAFSVAETLALTPDIVKGSQALGSVFSILQRKTAINRDNPTSSVVTDIQGDIEFRNVSFRYPARPDLIIFKDLNLKISAGKSLAIVGQSGSGKSTVISLVMRFYDPTSGAVMIDGFDIKGLNLRSLRMKIGLVQQEPALFSTTIYENIRYGNEEASEIEIMKAARAANAHSFISRMPEGYQTQVGDRGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTASEKLVQEALDTLMEGRTTILIAHRLSTIHNADSIAVLQHGKVVETGDHRQLITRPGSIYKQLVSLQQEKGEVPN* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1268 1254 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Vvi18g1268 1254 Pfam ABC transporter 391 539 IPR003439 GO:0005524
Vvi18g1268 1254 FunFam ABC transporter B family member 4 998 1251 - -
Vvi18g1268 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1244 IPR003439 GO:0005524
Vvi18g1268 1254 Gene3D - 363 617 IPR027417 -
Vvi18g1268 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1246 IPR027417 -
Vvi18g1268 1254 SUPERFAMILY ABC transporter transmembrane region 674 987 IPR036640 GO:0005524|GO:0016020
Vvi18g1268 1254 MobiDBLite consensus disorder prediction 616 646 - -
Vvi18g1268 1254 CDD ABC_MTABC3_MDL1_MDL2 374 609 - -
Vvi18g1268 1254 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524|GO:0016887
Vvi18g1268 1254 SMART AAA_5 1035 1236 IPR003593 GO:0016887
Vvi18g1268 1254 SMART AAA_5 399 585 IPR003593 GO:0016887
Vvi18g1268 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi18g1268 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 338 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi18g1268 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 608 IPR003439 GO:0005524
Vvi18g1268 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 333 - -
Vvi18g1268 1254 Pfam ABC transporter transmembrane region 690 959 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi18g1268 1254 Pfam ABC transporter transmembrane region 50 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi18g1268 1254 PANTHER ABC TRANSPORTER B FAMILY 19 697 IPR039421 -
Vvi18g1268 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 609 IPR027417 -
Vvi18g1268 1254 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Vvi18g1268 1254 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524|GO:0016887
Vvi18g1268 1254 Gene3D - 999 1252 IPR027417 -
Vvi18g1268 1254 SUPERFAMILY ABC transporter transmembrane region 37 346 IPR036640 GO:0005524|GO:0016020
Vvi18g1268 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 991 - -
Vvi18g1268 1254 FunFam ABC transporter B family member 4 363 616 - -
Vvi18g1268 1254 Gene3D ABC transporter type 1, transmembrane domain 36 977 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1268 Vvi-Chr18 12710695 12716154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1268 687 1251 Calmodulin-binding Proteins AT2G36910 41.754 3.32e-130 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1268 K05658 - vvi:100259227 2403.25