Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1264 ATGGCATCTCCTGTGGAATCAGTCCAGTGCTTTGGGCGGAAGAAGATTGTCGTGGCCGTCACCTACTGCAAGCGCGGCCGAGGCCTCATCAAGATCAACGGCTGCCCAATCAAGGCGGTGGAGCCCATCCTCCTTCTCGGTCGCCACCGTTTCGCCGACGTTGACATGCGCACCCGCGTAAAAGGTGGTGGTCACACCTCCCAGATATACGCAATCCGCCAAAGCATTGCCAAAGCCCTCGTTGCCTTCTATCAGAAGTACGTCGATGAGCAGTGCAAGAAGGAGCACGTGGACGTGCCGAGAAAGCGACGCGCGTCGGCTGCCAGTCTCCGACATTTATTCCGGCGTGGTGGTGTCGGCCGCTGCCGCTGCGGAGAGGTGGCGAGGGTGTTGAAGCCAGGTGGGGCGAGAGGGGAGGTAGGCTGTGAACAGATGGGTGCCTTGGGCTTGCCAATGGCACGGATATGGGCTTGA 474 0.6013 MASPVESVQCFGRKKIVVAVTYCKRGRGLIKINGCPIKAVEPILLLGRHRFADVDMRTRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQCKKEHVDVPRKRRASAASLRHLFRRGGVGRCRCGEVARVLKPGGARGEVGCEQMGALGLPMARIWA* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1264 157 PANTHER RIBOSOMAL PROTEIN S9 6 101 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vvi18g1264 157 Gene3D - 2 116 IPR014721 -
Vvi18g1264 157 ProSitePatterns Ribosomal protein S9 signature. 62 80 IPR020574 GO:0003735|GO:0005840|GO:0006412
Vvi18g1264 157 SUPERFAMILY Ribosomal protein S5 domain 2-like 7 96 IPR020568 -
Vvi18g1264 157 Pfam Ribosomal protein S9/S16 12 95 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1264 Vvi-Chr18 12678960 12679433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1264 5 99 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 72.381 3.13e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1264 K02960 - vvi:100243853 310.842