Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1263 ATGGAGCTGAAGATGAGAGCCTCCTTGAAATATGCTCTTCCTTTTTTCATATGCCTGATGATGTTTTCACGGGGCTTTGCGTACGGTGATCTTCAAGTGCTGTTGAAGCTCAGGTCTTTCATGATAGGGCCGAAGGGTTCTGGTCTGGAGGACTGGGTGGATGACTCGTCGTCTCTCTTTCCGCATTGCTCCTTCTCCGGTGTTTCATGTGATGAGGATTCTCGAGTGGTGTCTCTCAACCTCTCGTTTGTTACTCTATTTGGTTCGATACCGCCGGAGATCGGGATGTTGAACAAGTTAGTTAATCTCACGCTGGCATGCGACAATCTCACCGGGAAGCTTCCGATGGAGATGGCGAAGCTCACGTCTCTGAAGCTCGTCAACCTTTCGAATAACAATTTTAATGGTCAGTTTCCGGGGCGTATTCTTGTGGGAATGAAGGAGCTCGAGGTTCTGGACATGTATAACAACAATTTCACGGGTCCGCTTCCGACGGAGGTTGGGAAGCTGAAGAAGCTCAAGCACATGCATCTCGGTGGCAACTACTTCTCCGGTGATATTCCGGACGTATTCTCAGATATTCACAGCTTGGAGTTGCTGGGTTTGAATGGAAACAATCTTTCCGGCAGGATCCCGACTAGTTTGGTTCGGTTGTCGAACCTCCAAGGATTGTTCCTTGGTTACTTTAATATTTACGAAGGAGGTATTCCACCTGAGCTAGGGTTGCTGAGTTCGCTCCGAGTTCTTGACTTGGGGAGCTGCAACCTCACCGGAGAGATTCCACCGAGCCTAGGCCGTTTGAAGATGTTACACTCGTTGTTTCTACAACTTAATCAGCTCTCAGGGCACCTACCTCAAGAACTGTCAGGTTTGGTGAATCTAAAATCACTTGATCTCTCTAACAATGTGCTCACTGGAGAGATACCAGAAAGCTTTTCACAGCTTAGGGAATTGACGTTGATCAATCTGTTTGGGAACCAACTGCGCGGTCGTATTCCAGAGTTTATCGGCGACCTTCCAAACCTCGAGGTACTTCAGGTTTGGGAGAATAACTTCACGTTTGAACTCCCTGAACGTCTCGGTCGTAACGGGAAGCTTAAGAACCTCGACGTTGCGACGAATCATCTCACCGGAACGATACCTCGGGATTTGTGCAAAGGAGGAAAGTTGCTGACGTTGATATTGATGGAAAATTATTTCTTCGGACCGATCCCTGAGCAGCTCGGCGAATGCAAATCGCTGACTCGAATAAGAATCATGAAGAACTTCTTCAATGGAACTATTCCCGCTGGGTTGTTCAACTTACCGTTGGTAAACATGCTCGAGCTGGACGACAACTTATTCACCGGAGAACTACCTGCGCATATTTCGGGCGACGTGCTTGGAATTTTCACGGTCTCTAACAACCTGATCACTGGAAAAATCCCTCCGGCAATTGGCAATCTGTCTAGTTTGCAGACTTTGGCGCTTCAAATTAACAGATTCTCCGGTGAAATTCCTGGGGAAATCTTCAATCTAAAGATGCTTTCAAAGGTCAATATCAGCGCCAACAACCTAAGCGGTGAAATTCCAGCATGCATCGTTTCTTGTACTTCACTAACATCAATTGATTTCAGTCAGAACAGCCTGAACGGAGAAATTCCAAAGGGGATTGCTAAGCTTGGGATCTTGGGCATACTGAATTTGTCAACCAACCACTTGAACGGCCAAATTCCGAGTGAAATCAAATCTATGGCTAGTCTAACAACACTGGACCTCTCCTATAATGATTTTTCTGGTGTCATTCCGACCGGCGGTCAGTTTCCGGTCTTCAACTCTAGCTCCTTCGCTGGAAACCCGAACCTTTGCCTACCGCGTGTCCCTTGTTCATCACTTCAAAATATAACCCAAATTCACGGTAGAAGGCAGACGTCATCGTTTACTTCTTCAAAACTCGTCATCACGATCATTGCCCTTGTCGCCTTCGCGTTGGTATTAACCCTCGCAGTTCTCAGAATCCGAAGAAAGAAGCATCAGAAATCAAAGGCCTGGAAGCTCACAGCGTTCCAACGGCTAGACTTCAAAGCTGAAGACGTGCTGGAATGCTTGAAGGAAGAAAACATCATCGGAAAAGGCGGTGCCGGGATCGTCTACCGCGGGTCCATGCCAGACGGGGTTGACGTGGCTATCAAAAGACTAGTGGGGCGCGGCAGCGGAAGAAGCGACCACGGCTTTTCCGCCGAAATCCAAACGCTAGGACGAATTCGACACCGAAACATCGTGAGACTGTTGGGTTACGTGTCGAACAAAGACACCAACTTGTTGCTGTACGAGTACATGCCGAACGGAAGCTTGGGAGAGATACTGCATGGGTCAAAGGGAGCCCACTTGCAGTGGGAAACCAGGTATAGAATTGCAGTGGAGGCCGCGAAGGGGTTGTGCTATCTCCACCACGATTGTTCCCCACTCATCATTCACAGGGATGTGAAGTCCAACAACATCTTGCTGGACTCGGATTTTGAGGCTCATGTGGCTGATTTTGGGCTTGCCAAGTTCTTACAGGACGCTGGAGCCTCGGAGTGCATGTCTTCCATCGCTGGCTCCTACGGCTACATCGCCCCAGAGTACGCCTATACGTTGAAAGTAGATGAGAAGAGCGACGTGTACAGCTTCGGTGTGGTGCTGCTGGAGTTGATCGCAGGGCGGAAGCCAGTGGGCGAGTTCGGCGACGGGGTGGACATCGTGAGGTGGGTCCGGAAAACAACATCGGAGATATCTCAGCCGTCGGATAGAGCTTCGGTTCTGGCAGTAGTGGACCCCAGGCTTAGTGGGTACCCACTGACAGGTGTCATAAATCTGTTCAAGATTGCAATGATGTGCGTTGAGGATGAGAGCTCTGCAAGGCCCACCATGAGAGAGGTGGTTCACATGCTCACCAATCCTCCCCAGAATGCTCCAAGCCTCATCACTCTTTAA 2955 0.4914 MELKMRASLKYALPFFICLMMFSRGFAYGDLQVLLKLRSFMIGPKGSGLEDWVDDSSSLFPHCSFSGVSCDEDSRVVSLNLSFVTLFGSIPPEIGMLNKLVNLTLACDNLTGKLPMEMAKLTSLKLVNLSNNNFNGQFPGRILVGMKELEVLDMYNNNFTGPLPTEVGKLKKLKHMHLGGNYFSGDIPDVFSDIHSLELLGLNGNNLSGRIPTSLVRLSNLQGLFLGYFNIYEGGIPPELGLLSSLRVLDLGSCNLTGEIPPSLGRLKMLHSLFLQLNQLSGHLPQELSGLVNLKSLDLSNNVLTGEIPESFSQLRELTLINLFGNQLRGRIPEFIGDLPNLEVLQVWENNFTFELPERLGRNGKLKNLDVATNHLTGTIPRDLCKGGKLLTLILMENYFFGPIPEQLGECKSLTRIRIMKNFFNGTIPAGLFNLPLVNMLELDDNLFTGELPAHISGDVLGIFTVSNNLITGKIPPAIGNLSSLQTLALQINRFSGEIPGEIFNLKMLSKVNISANNLSGEIPACIVSCTSLTSIDFSQNSLNGEIPKGIAKLGILGILNLSTNHLNGQIPSEIKSMASLTTLDLSYNDFSGVIPTGGQFPVFNSSSFAGNPNLCLPRVPCSSLQNITQIHGRRQTSSFTSSKLVITIIALVAFALVLTLAVLRIRRKKHQKSKAWKLTAFQRLDFKAEDVLECLKEENIIGKGGAGIVYRGSMPDGVDVAIKRLVGRGSGRSDHGFSAEIQTLGRIRHRNIVRLLGYVSNKDTNLLLYEYMPNGSLGEILHGSKGAHLQWETRYRIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDSDFEAHVADFGLAKFLQDAGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGEFGDGVDIVRWVRKTTSEISQPSDRASVLAVVDPRLSGYPLTGVINLFKIAMMCVEDESSARPTMREVVHMLTNPPQNAPSLITL* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1263 984 Pfam Leucine rich repeat 270 328 IPR001611 GO:0005515
Vvi18g1263 984 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 773 982 - -
Vvi18g1263 984 SUPERFAMILY L domain-like 312 630 - -
Vvi18g1263 984 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Vvi18g1263 984 Gene3D Ribonuclease Inhibitor 143 231 IPR032675 -
Vvi18g1263 984 ProSiteProfiles Protein kinase domain profile. 696 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1263 984 FunFam Leucine-rich repeat receptor-like protein kinase 27 189 - -
Vvi18g1263 984 Gene3D Ribonuclease Inhibitor 354 627 IPR032675 -
Vvi18g1263 984 Gene3D Ribonuclease Inhibitor 29 142 IPR032675 -
Vvi18g1263 984 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 231 336 - -
Vvi18g1263 984 Gene3D Phosphorylase Kinase; domain 1 661 772 - -
Vvi18g1263 984 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 665 772 - -
Vvi18g1263 984 SMART serkin_6 696 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1263 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Vvi18g1263 984 SUPERFAMILY RNI-like 78 386 - -
Vvi18g1263 984 SMART LRR_typ_2 339 363 IPR003591 -
Vvi18g1263 984 SMART LRR_typ_2 578 601 IPR003591 -
Vvi18g1263 984 SMART LRR_typ_2 243 267 IPR003591 -
Vvi18g1263 984 SMART LRR_typ_2 146 170 IPR003591 -
Vvi18g1263 984 SMART LRR_typ_2 482 506 IPR003591 -
Vvi18g1263 984 SMART LRR_typ_2 291 315 IPR003591 -
Vvi18g1263 984 SMART LRR_typ_2 121 145 IPR003591 -
Vvi18g1263 984 Gene3D Ribonuclease Inhibitor 232 353 IPR032675 -
Vvi18g1263 984 PANTHER RECEPTOR-LIKE PROTEIN 55 438 975 - -
Vvi18g1263 984 Gene3D Transferase(Phosphotransferase) domain 1 773 979 - -
Vvi18g1263 984 ProSiteProfiles Leucine-rich repeat profile. 293 315 IPR001611 GO:0005515
Vvi18g1263 984 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515
Vvi18g1263 984 SUPERFAMILY Protein kinase-like (PK-like) 689 971 IPR011009 -
Vvi18g1263 984 Pfam Protein tyrosine and serine/threonine kinase 697 971 IPR001245 GO:0004672|GO:0006468
Vvi18g1263 984 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 343 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1263 Vvi-Chr18 12668543 12671756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1263 26 984 Receptor kinase-like Gene Family AT1G75820 69.407 0.0 1362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi18g1263 PK_Tyr_Ser-Thr 3.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1263 K00924 - vvi:100260741 1909.42