Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1258 ATGACGCTCGAGGACTTCTTTACCCTTACTGAAATGAAAGATGGGCTCACAGCCCCTGCTCGAGTTGAGGAGTTGGTTACTGTGATGCAGAAGGAGAAAGATTGTGTTGTAAAGAATGTTGGTGATGCTACCAGACAGTGGTCTACTGTTGCAAGCACCATAGCAGCCACAGAGAACCAAGATTGTCTTGATCTTTTTATTCAGTTAGATGGACTCTGGTTTATAAATAGGTGGCTCAAGGATGCTCAGAAGTTTGGTAATGACCCAAGTGACAGCTTTGTGGAAGAGTCAATCACTGCTCTATTAAGGGCACTTGAAAAGCTTCACATAGACAATGAGAAGTTAATTTCTTCTGGAATCTGGATTACTGTGAAGAATCTTCTCGGCCATGATAGCTCTAGGATTCAGGATAGGGCAAGAGCCTTGTTTGATAGCTGGAAACAGAGTAAGGACTGTGATGCAGTTCACCAGGATGTTGAGAAAGTTGGGGCATTTTGTGATGATGGGATCATAGTCAGTGCAAAGCCCACTGGGGAAAGTGGACTGCCAGAATGTTCTGCCATGGATATTTCTCTTTCCAAAGAAAGTGCTAATGTAGAAACTCATGTAGCAGACACTGCTAGGGGTGAAATTTTGCAGTCAAGCTCAGATGGTGTTGGACCAGATCGGAGTGAGACCGTACAGATTCAAACATCTAACAATCAGGTTGACACTGACATAACTTTAGACCATCCGGACATGGAGGTTGAATCTGCAGATCCTCCTCCCCACTCTGTCATGCTAAACCCTGTTCAAGAAAACAACCTCTCTATGAAGGAAGAATCCCCATCATGCCCTTCAGAAGGAACCACCACTATCAAGACTAGTTGTTCATCAATTCCAGCCGAAGGAAATTTTGAAGGGAACTCAGGTGTCCCCAAAGTGAATGAGTTCACTGATGATGAGAAGCAGATGCACGAAATGAATAGTTCCCCAGACCATTTGGGGAAGGAATTTTCTCCAACCTCTACTACACTGGAGCCCAGAGTAGTTTCTTCAACGGGTGACTTCTCTGAAAAATCTAAAACGCTTGGGTCTGAACCTGAGAGTGGGAAGGATGATATTGGTGTTCTAGGTCATTGCAAAAGTACACTTGTCTTCAAGACTACAGGTGAAGGTGGTGAAAATTGTTCTAATGTTTTGCAGGATGGCAATGACGGTACATTGGGGAAATCTGAGGATCCAGAGACTTCTTTTTCCAGGATGGAGGACATTGGAGGGATCAATGAAGATCAGGGGCATGCTAGTGATGGATGTGATGATTTGACAAATGCTTCTGATTTCTCAAGATTAGCAATGGAGGGTAAAGGGTCTGACTTGATTGACAAGAAGTCCGATATTGAACTTGAGTATGGCATGGTCGATCCTCTAGAACTTGCTCGAAGAGTTGCAAAGGAAGTGGAGAGACAAGTGGGGGATTTCAGAGAACCATTCTGCAGCTCATCTTCAGAGAAAATCTCAGAAGGTGGAATCAGGGTGCCAGATAGTCCAGATTCCATAAATGGAAAGCAACAACAACCCATGGATGGCCCACCAACTGAGGTGCCAGCTGGACAAATTACCCCTGTCGACGCATTGTTGAAGGAGGAGGAGCATTTAAACTCACAAAACCTAGATGTGGAACCAGAAAATTGCATACCTGATGTTGAATCCTCTCTGGTGACAGAAACGGCGCAAGGACCAGAAGTTAACAAAGAGAAAGGTGCGTGTGATTTTGATTTGAATCATTTCGATCTGAATCAAGAAATCGTCCCTGAGGATATGGATCGCCCTGTGAATCCCATTTCTACCCCCGTTGCTGTTGTGTCCGCTTCAAGGGCAACGGCGGCTCCTGGTTTGCCTGTAGCCCCTCTGCAGTTTGAGGGGACTCGTGGATGGAAAGGATCTGCTGCAACAAGTGCTTTTCGGCCAGCATCCCCTCGCAGAATACCTGATGGTGGTAAAACACTCTTAACTGGGGAAACCTCCAACAGTTCAAAGCAGAAGCAGCAGTTTGATTTTGATCTGAATGTGGTTGAGGGTGGAGACGATGATCTGATGTTTCCAGCGTCATCTGGTTTCCCATCAGGAGAATCTTCAGTGGAAGTAAGTCCTAAGAGATCAGATAGGCTCAAGTTGGACTTAAACCGTGTCAGCAATGAGGGTGATGCTCCACTGTCAGACTGGAAGATAGAAGGACCGACTGTTCACTACCGGAATGGCCACCGCAGCCCATCTCCTGCCTTTTCATCCTCATCATCAATGCAGTCTTCCATGAGGAACATTGATTTGAATGACAGACCATCTTTGCAAAACAATTCTTCAGATCTTCAGCCCAATCCTGGAGGACTCAAACAAGATGAACCTGTCATTTCTCTTTTGGGAACTAGAGTGGGGGTCAATAGAAAAACTGTTATGCCTCAAACACCATCCTACCAGCCCAACGGAAAGGCTCCAGAGACTGCAGTGGATGCTAACTTGGGAAGAACAGGTGGTATTTTGGGGATGGGACCGCCGGGGTCTTATCCACATTCTCATGTTCTAGGATACAATGGTCTTACAACAGGGGCACCAATGTCATTCTCCTCGCCCATGTATGTACCTGGTGGCTCGATACCATATATGGTGGATTCTAGAGGAGCTCCTGTGGTACCGCAAATTATGGGCTCTGCATCAACGGTAGCCCCTTCATACTCTCAGTCACCCTTCCTCATGACCATGAGTGGTGTGCCGTCAGGTATAAATGGGGCTGGGCTCTCCCGGCCTAATTTTGATCTGAATTCGGGCTTCATAGTTGATGGAGGGAACAGAGACACAGGGGTTTCAAGGCAGCTTTTCATTCCTGGTCAAAGCGAGCAATTGAGGGGCAATTTGCAACCTTCCTCGAGTTCAGGGCTTGGTGGGAAAAGGAAGGAACCTGACGGTGGGTGGGAATCCTACCCGTTTAACTACAAACTTCAACCACCATGGAAATAG 2994 0.4633 MTLEDFFTLTEMKDGLTAPARVEELVTVMQKEKDCVVKNVGDATRQWSTVASTIAATENQDCLDLFIQLDGLWFINRWLKDAQKFGNDPSDSFVEESITALLRALEKLHIDNEKLISSGIWITVKNLLGHDSSRIQDRARALFDSWKQSKDCDAVHQDVEKVGAFCDDGIIVSAKPTGESGLPECSAMDISLSKESANVETHVADTARGEILQSSSDGVGPDRSETVQIQTSNNQVDTDITLDHPDMEVESADPPPHSVMLNPVQENNLSMKEESPSCPSEGTTTIKTSCSSIPAEGNFEGNSGVPKVNEFTDDEKQMHEMNSSPDHLGKEFSPTSTTLEPRVVSSTGDFSEKSKTLGSEPESGKDDIGVLGHCKSTLVFKTTGEGGENCSNVLQDGNDGTLGKSEDPETSFSRMEDIGGINEDQGHASDGCDDLTNASDFSRLAMEGKGSDLIDKKSDIELEYGMVDPLELARRVAKEVERQVGDFREPFCSSSSEKISEGGIRVPDSPDSINGKQQQPMDGPPTEVPAGQITPVDALLKEEEHLNSQNLDVEPENCIPDVESSLVTETAQGPEVNKEKGACDFDLNHFDLNQEIVPEDMDRPVNPISTPVAVVSASRATAAPGLPVAPLQFEGTRGWKGSAATSAFRPASPRRIPDGGKTLLTGETSNSSKQKQQFDFDLNVVEGGDDDLMFPASSGFPSGESSVEVSPKRSDRLKLDLNRVSNEGDAPLSDWKIEGPTVHYRNGHRSPSPAFSSSSSMQSSMRNIDLNDRPSLQNNSSDLQPNPGGLKQDEPVISLLGTRVGVNRKTVMPQTPSYQPNGKAPETAVDANLGRTGGILGMGPPGSYPHSHVLGYNGLTTGAPMSFSSPMYVPGGSIPYMVDSRGAPVVPQIMGSASTVAPSYSQSPFLMTMSGVPSGINGAGLSRPNFDLNSGFIVDGGNRDTGVSRQLFIPGQSEQLRGNLQPSSSSGLGGKRKEPDGGWESYPFNYKLQPPWK* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1258 997 MobiDBLite consensus disorder prediction 385 437 - -
Vvi18g1258 997 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 149 IPR035441 -
Vvi18g1258 997 Pfam TFIIS helical bundle-like domain 101 148 IPR017923 -
Vvi18g1258 997 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 997 - -
Vvi18g1258 997 MobiDBLite consensus disorder prediction 328 354 - -
Vvi18g1258 997 MobiDBLite consensus disorder prediction 953 972 - -
Vvi18g1258 997 MobiDBLite consensus disorder prediction 663 677 - -
Vvi18g1258 997 MobiDBLite consensus disorder prediction 490 531 - -
Vvi18g1258 997 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 18 150 IPR035441 -
Vvi18g1258 997 MobiDBLite consensus disorder prediction 743 794 - -
Vvi18g1258 997 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Vvi18g1258 997 MobiDBLite consensus disorder prediction 953 997 - -
Vvi18g1258 997 MobiDBLite consensus disorder prediction 319 368 - -
Vvi18g1258 997 MobiDBLite consensus disorder prediction 641 677 - -
Vvi18g1258 997 MobiDBLite consensus disorder prediction 750 787 - -
Vvi18g1258 997 MobiDBLite consensus disorder prediction 385 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1258 Vvi-Chr18 12579439 12582501 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi18g1258 Med26 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1258 - - vvi:100247144 1967.59